Sat Apr 27 13:25:20 UTC 2024 I: starting to build r-base/unstable/armhf on jenkins on '2024-04-27 13:25' Sat Apr 27 13:25:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_25/4794/console.log Sat Apr 27 13:25:20 UTC 2024 I: Downloading source for unstable/r-base=4.4.0-2 --2024-04-27 13:25:21-- http://deb.debian.org/debian/pool/main/r/r-base/r-base_4.4.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2939 (2.9K) [text/prs.lines.tag] Saving to: ‘r-base_4.4.0-2.dsc’ 0K .. 100% 267M=0s 2024-04-27 13:25:21 (267 MB/s) - ‘r-base_4.4.0-2.dsc’ saved [2939/2939] Sat Apr 27 13:25:21 UTC 2024 I: r-base_4.4.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-base Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended Architecture: any all Version: 4.4.0-2 Maintainer: Dirk Eddelbuettel Homepage: http://www.r-project.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/edd/r-base Vcs-Git: https://salsa.debian.org/edd/r-base.git Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386] | openjdk-10-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], mpack, bash-completion, libtirpc-dev Package-List: r-base deb gnu-r optional arch=all r-base-core deb gnu-r optional arch=any r-base-dev deb gnu-r optional arch=all r-base-html deb doc optional arch=all r-doc-html deb doc optional arch=all r-doc-info deb doc optional arch=all r-doc-pdf deb doc optional arch=all r-mathlib deb gnu-r optional arch=any r-recommended deb gnu-r optional arch=all Checksums-Sha1: cc0d1fe5df2791f7daff55691a7b9feb8e33f50c 37335563 r-base_4.4.0.orig.tar.gz 94ba9bc5a21a473b361a5c2c3748b6b62dd92beb 99872 r-base_4.4.0-2.debian.tar.xz Checksums-Sha256: ace4125f9b976d2c53bcc5fca30c75e30d4edc401584859cbadb080e72b5f030 37335563 r-base_4.4.0.orig.tar.gz d166c45874b90dc255bf259d1495f10e415763a968872f562579ae4af141a4bf 99872 r-base_4.4.0-2.debian.tar.xz Files: 400b43da0c2e67e62ec9f90d509a9e10 37335563 r-base_4.4.0.orig.tar.gz 4fce58b42cfdd9f3d5d5eae611c78248 99872 r-base_4.4.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIVAwUBZiu0QaFIn+KrmaIaAQgxZg//diP2IWiF5vKthZQcV8QBa4qVYTWbxNyf s9WxDWi9V5wSGD8UC98eLD6TJv4R9A/6mlww+USGSj0VV16lnqYtGQZJYUDT+ohS 5PwogFPbFgukCC8xKeD7WGNYy4YeCnL5U1okKV3QRp8wq2gxVFufz+ejygOcXPtj /2qCjAwmKzsvlTIKJW+UPrOXvj2zg3bMt2fe1+R/ugrm5fh6rLoOXQbje7JDzLAv olITKct8Wwd31SZPbf8NLdhcAJf9e0CCqnrgRrOoUxb05Mp042YUhhQ7d/ZNVcEf k0+0reJ6I6aTJGU48uN1xGV4PS5FvH3dNF/tnvNlw8qUXedBsV1MtVlcrTdAzRiD MCtHk7ipw6NwszRfs8h1fDe6QTIsG5wB7/GstpUkb7pWuXBYI3VjV/dEqwdLu9M8 qmtrTdBccLRHhpXaaUey4hYAJNNi0X5PJKJlBWeZd5LDnNOhlvDc7hzr7O9LLXCX yfUHd01EOdu8ioH5hPBNH1pRtmCg9IBu7AZmhXO9EZoDw/UvRpLJxficDwx+0qt1 yh8iVjfG37hqmc1wkyha6CwJgZ9l+urkV2i9q74bNOUpnKhXEf/S2GUxkHcGJqbG 9c3M2mAAHNmH25RTGMpUk2xMef9nF+IlRcgal4dy0GDO9ZEukJqBneqAoWE3xLhp zxq93fTK8pA= =4IoF -----END PGP SIGNATURE----- Sat Apr 27 13:25:21 UTC 2024 I: Checking whether the package is not for us Sat Apr 27 13:25:21 UTC 2024 I: Starting 1st build on remote node virt32c-armhf-rb.debian.net. Sat Apr 27 13:25:21 UTC 2024 I: Preparing to do remote build '1' on virt32c-armhf-rb.debian.net. Sat Apr 27 14:29:28 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 27 01:25:42 -12 2024 I: pbuilder-time-stamp: 1714224342 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-base_4.4.0-2.dsc] I: copying [./r-base_4.4.0.orig.tar.gz] I: copying [./r-base_4.4.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Apr 26 14:03:45 2024 gpgv: using RSA key A1489FE2AB99A21A gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-base_4.4.0-2.dsc: no acceptable signature found dpkg-source: info: extracting r-base in r-base-4.4.0 dpkg-source: info: unpacking r-base_4.4.0.orig.tar.gz dpkg-source: info: unpacking r-base_4.4.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set_R_LIBS_USER_and_SITE_in_Renviron.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32130/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='264b2bea02a84ae283161fc448288b3b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32130' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/pbuilderrc_VvFd --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/b1 --logfile b1/build.log r-base_4.4.0-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32c 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 24 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32130/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, libtirpc-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on gfortran (>= 4:4.9.2-2); however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on tcl8.6-dev; however: Package tcl8.6-dev is not installed. pbuilder-satisfydepends-dummy depends on tk8.6-dev; however: Package tk8.6-dev is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on groff-base; however: Package groff-base is not installed. pbuilder-satisfydepends-dummy depends on libncurses-dev; however: Package libncurses-dev is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on libpcre2-dev; however: Package libpcre2-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-openssl-dev | libcurl4-dev; however: Package libcurl4-openssl-dev is not installed. Package libcurl4-dev is not installed. pbuilder-satisfydepends-dummy depends on xdg-utils; however: Package xdg-utils is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libx11-dev; however: Package libx11-dev is not installed. pbuilder-satisfydepends-dummy depends on libxt-dev; however: Package libxt-dev is not installed. pbuilder-satisfydepends-dummy depends on x11proto-core-dev; however: Package x11proto-core-dev is not installed. pbuilder-satisfydepends-dummy depends on libpango1.0-dev; however: Package libpango1.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libcairo2-dev; however: Package libcairo2-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on xvfb; however: Package xvfb is not installed. pbuilder-satisfydepends-dummy depends on xauth; however: Package xauth is not installed. pbuilder-satisfydepends-dummy depends on xfonts-base; however: Package xfonts-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-base; however: Package texlive-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however: Package texlive-fonts-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however: Package texlive-extra-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on default-jdk | openjdk-10-jdk; however: Package default-jdk is not installed. Package openjdk-10-jdk is not installed. pbuilder-satisfydepends-dummy depends on mpack; however: Package mpack is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on libtirpc-dev; however: Package libtirpc-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bison{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} gir1.2-freedesktop{a} gir1.2-freedesktop-dev{a} gir1.2-glib-2.0{a} gir1.2-glib-2.0-dev{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} intltool-debian{a} java-common{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk1.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie-dev{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-homedir-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfribidi-dev{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-13-dev{a} libgfortran5{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgraphite2-dev{a} libgssapi-krb5-2{a} libgtk2.0-0t64{a} libgtk2.0-common{a} libharfbuzz-cairo0{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz-subset0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} liblzma-dev{a} liblzo2-2{a} libmagic-mgc{a} libmagic1t64{a} libmime-charset-perl{a} libmount-dev{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpotrace0{a} libpsl5t64{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm-dev{a} libsm6{a} libsombok3{a} libssh2-1t64{a} libsub-override-perl{a} libsynctex2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtext-unidecode-perl{a} libthai-data{a} libthai-dev{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunicode-linebreak-perl{a} libunwind8{a} libvulkan1{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxfont2{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbfile1{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6t64{a} libxtst6{a} libxxf86vm1{a} libyaml-tiny-perl{a} libz3-4{a} libzstd-dev{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} mpack{a} netbase{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pango1.0-tools{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} python3{a} python3-minimal{a} python3-packaging{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texinfo{a} texinfo-lib{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tk8.6{a} tk8.6-dev{a} tzdata{a} ucf{a} uuid-dev{a} x11-common{a} x11-xkb-utils{a} x11proto-core-dev{a} x11proto-dev{a} xauth{a} xdg-utils{a} xfonts-base{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xserver-common{a} xtrans-dev{a} xvfb{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf bzip2-doc cm-super curl dbus dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix ghostscript javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libgpm2 libgtk2.0-bin liblog-log4perl-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools librsvg2-common libspreadsheet-parseexcel-perl libwww-perl libx11-protocol-perl libxml-sax-expat-perl lynx mesa-vulkan-drivers publicsuffix ruby tex-gyre texlive-fonts-extra-links tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 337 newly installed, 0 to remove and 0 not upgraded. Need to get 1110 MB of archives. After unpacking 3116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf bash-completion all 1:2.11-8 [224 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.2.1-3 [1326 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40-7 [85.6 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.78.4-7 [1285 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf shared-mime-info armhf 2.4-4 [753 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.3.2-0.4+b1 [106 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.3.2-0.4+b1 [262 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-3+b3 [123 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf gtk-update-icon-cache armhf 3.24.41-4 [45.6 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf adwaita-icon-theme all 46.0-1 [614 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf at-spi2-common all 2.52.0-1 [166 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf bison armhf 2:3.8.2+dfsg-1+b1 [1142 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf ca-certificates-java all 20240118 [11.6 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 60 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf java-common all 0.75 [6640 B] Get: 67 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libnspr4 armhf 2:4.35-1.1+b1 [87.2 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libnss3 armhf 2:3.99-1 [1220 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libpcsclite1 armhf 2.0.3-1 [47.7 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre-headless armhf 17.0.11+9-1 [38.2 MB] Get: 72 http://deb.debian.org/debian unstable/main armhf default-jre-headless armhf 2:1.17-75 [3068 B] Get: 73 http://deb.debian.org/debian unstable/main armhf libgtk2.0-common all 2.24.33-4 [2661 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libatk1.0-0t64 armhf 2.52.0-1 [44.0 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-1 [140 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-1 [114 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.0-3+b1 [442 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.0-2.4 [19.5 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 101 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libcups2t64 armhf 2.4.7-1.2+b1 [213 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [192 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [41.8 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [31.2 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.1 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libxcursor1 armhf 1:1.2.1-1 [37.9 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libxdamage1 armhf 1:1.1.6-1 [14.6 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libxinerama1 armhf 2:1.1.4-3 [17.4 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libxrandr2 armhf 2:1.5.4-1 [33.0 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libgtk2.0-0t64 armhf 2.24.33-4 [1556 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libglvnd0 armhf 1.7.0-1 [52.3 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libdrm-common all 2.4.120-2 [7688 B] Get: 124 http://deb.debian.org/debian unstable/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf libglapi-mesa armhf 24.0.6-1 [43.2 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libxcb-dri2-0 armhf 1.17.0-1 [106 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libxcb-dri3-0 armhf 1.17.0-1 [106 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libxcb-glx0 armhf 1.17.0-1 [120 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libxcb-present0 armhf 1.17.0-1 [105 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libxcb-randr0 armhf 1.17.0-1 [115 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libxcb-sync1 armhf 1.17.0-1 [108 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf libxcb-xfixes0 armhf 1.17.0-1 [109 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 135 http://deb.debian.org/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf libvulkan1 armhf 1.3.280.0-1 [108 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf libllvm17t64 armhf 1:17.0.6-10 [21.6 MB] Get: 143 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dri armhf 24.0.6-1 [6474 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf libglx-mesa0 armhf 24.0.6-1 [130 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf libglx0 armhf 1.7.0-1 [32.2 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libgl1 armhf 1.7.0-1 [90.8 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libasound2-data all 1.2.11-1 [20.9 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf libasound2t64 armhf 1.2.11-1+b1 [316 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libgif7 armhf 5.2.2-1 [41.2 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23 [252 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf libxtst6 armhf 2:1.2.3-1.1 [26.2 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre armhf 17.0.11+9-1 [163 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf default-jre armhf 2:1.17-75 [1056 B] Get: 156 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk-headless armhf 17.0.11+9-1 [67.5 MB] Get: 157 http://deb.debian.org/debian unstable/main armhf default-jdk-headless armhf 2:1.17-75 [1108 B] Get: 158 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk armhf 17.0.11+9-1 [10.1 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf default-jdk armhf 2:1.17-75 [1068 B] Get: 160 http://deb.debian.org/debian unstable/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf libgfortran-13-dev armhf 13.2.0-23 [306 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-23 [8198 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf gfortran-13 armhf 13.2.0-23 [11.2 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7 [1288 B] Get: 166 http://deb.debian.org/debian unstable/main armhf gfortran armhf 4:13.2.0-7 [1432 B] Get: 167 http://deb.debian.org/debian unstable/main armhf gir1.2-glib-2.0 armhf 1.78.1-19 [164 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libcairo-gobject2 armhf 1.18.0-3+b1 [129 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf gir1.2-freedesktop armhf 1.78.1-19 [46.5 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf gir1.2-glib-2.0-dev armhf 1.78.1-19 [850 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf gir1.2-freedesktop-dev armhf 1.78.1-19 [41.8 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libharfbuzz-gobject0 armhf 8.3.0-2+b1 [1782 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf gir1.2-harfbuzz-0.0 armhf 8.3.0-2+b1 [1794 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf libpangoxft-1.0-0 armhf 1.52.1+ds-1 [24.9 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf gir1.2-pango-1.0 armhf 1.52.1+ds-1 [38.4 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf libapache-pom-java all 29-2 [5276 B] Get: 179 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf uuid-dev armhf 2.40-7 [42.5 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf libblkid-dev armhf 2.40-7 [190 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b3 [292 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-5.1 [28.3 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf liblzo2-2 armhf 2.10-2+b1 [48.0 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf libcairo-script-interpreter2 armhf 1.18.0-3+b1 [49.9 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf libpng-dev armhf 1.6.43-5 [344 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf libfreetype-dev armhf 2.13.2+dfsg-1+b4 [546 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 194 http://deb.debian.org/debian unstable/main armhf libfontconfig-dev armhf 2.15.0-1.1 [395 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf libffi-dev armhf 3.4.6-1 [55.9 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf libglib2.0-data all 2.78.4-7 [1225 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf libglib2.0-bin armhf 2.78.4-7 [110 kB] Get: 198 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf libglib2.0-dev-bin armhf 2.78.4-7 [155 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf libsepol-dev armhf 3.5-2 [319 kB] Get: 201 http://deb.debian.org/debian unstable/main armhf libpcre2-16-0 armhf 10.42-4+b1 [212 kB] Get: 202 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.42-4+b1 [203 kB] Get: 203 http://deb.debian.org/debian unstable/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.3 kB] Get: 204 http://deb.debian.org/debian unstable/main armhf libpcre2-dev armhf 10.42-4+b1 [668 kB] Get: 205 http://deb.debian.org/debian unstable/main armhf libselinux1-dev armhf 3.5-2+b2 [152 kB] Get: 206 http://deb.debian.org/debian unstable/main armhf libmount-dev armhf 2.40-7 [25.8 kB] Get: 207 http://deb.debian.org/debian unstable/main armhf libglib2.0-dev armhf 2.78.4-7 [1529 kB] Get: 208 http://deb.debian.org/debian unstable/main armhf libpixman-1-dev armhf 0.42.2-1+b1 [498 kB] Get: 209 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 210 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 211 http://deb.debian.org/debian unstable/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 212 http://deb.debian.org/debian unstable/main armhf x11proto-dev all 2024.1-1 [603 kB] Get: 213 http://deb.debian.org/debian unstable/main armhf x11proto-core-dev all 2024.1-1 [3312 B] Get: 214 http://deb.debian.org/debian unstable/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] Get: 215 http://deb.debian.org/debian unstable/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 216 http://deb.debian.org/debian unstable/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 217 http://deb.debian.org/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 218 http://deb.debian.org/debian unstable/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 219 http://deb.debian.org/debian unstable/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 220 http://deb.debian.org/debian unstable/main armhf libxcb1-dev armhf 1.17.0-1 [179 kB] Get: 221 http://deb.debian.org/debian unstable/main armhf libx11-dev armhf 2:1.8.7-1 [816 kB] Get: 222 http://deb.debian.org/debian unstable/main armhf libxcb-render0-dev armhf 1.17.0-1 [118 kB] Get: 223 http://deb.debian.org/debian unstable/main armhf libxcb-shm0-dev armhf 1.17.0-1 [108 kB] Get: 224 http://deb.debian.org/debian unstable/main armhf libxext-dev armhf 2:1.3.4-1+b1 [103 kB] Get: 225 http://deb.debian.org/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1.1 [38.1 kB] Get: 226 http://deb.debian.org/debian unstable/main armhf libcairo2-dev armhf 1.18.0-3+b1 [43.2 kB] Get: 227 http://deb.debian.org/debian unstable/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 228 http://deb.debian.org/debian unstable/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 229 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 230 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 231 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 232 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 233 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.7.1-3 [391 kB] Get: 234 http://deb.debian.org/debian unstable/main armhf libcurl4-openssl-dev armhf 8.7.1-3 [505 kB] Get: 235 http://deb.debian.org/debian unstable/main armhf libdatrie-dev armhf 0.2.13-3 [15.2 kB] Get: 236 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 237 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 238 http://deb.debian.org/debian unstable/main armhf libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 239 http://deb.debian.org/debian unstable/main armhf libfontbox-java all 1:1.8.16-5 [211 kB] Get: 240 http://deb.debian.org/debian unstable/main armhf libfontconfig1-dev armhf 2.15.0-1.1 [269 kB] Get: 241 http://deb.debian.org/debian unstable/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 242 http://deb.debian.org/debian unstable/main armhf libfribidi-dev armhf 1.0.13-3+b1 [109 kB] Get: 243 http://deb.debian.org/debian unstable/main armhf libgraphite2-dev armhf 1.3.14-2 [20.0 kB] Get: 244 http://deb.debian.org/debian unstable/main armhf libharfbuzz-cairo0 armhf 8.3.0-2+b1 [1792 kB] Get: 245 http://deb.debian.org/debian unstable/main armhf libharfbuzz-icu0 armhf 8.3.0-2+b1 [1768 kB] Get: 246 http://deb.debian.org/debian unstable/main armhf libharfbuzz-subset0 armhf 8.3.0-2+b1 [2159 kB] Get: 247 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 248 http://deb.debian.org/debian unstable/main armhf libharfbuzz-dev armhf 8.3.0-2+b1 [1896 kB] Get: 249 http://deb.debian.org/debian unstable/main armhf libjbig-dev armhf 2.1-6.1+b1 [27.8 kB] Get: 250 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3 [260 kB] Get: 251 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-3 [71.9 kB] Get: 252 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 253 http://deb.debian.org/debian unstable/main armhf libkpathsea6 armhf 2023.20230311.66589-9+b2 [145 kB] Get: 254 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 255 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Get: 256 http://deb.debian.org/debian unstable/main armhf liblerc-dev armhf 4.0.0+ds-4+b1 [153 kB] Get: 257 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [281 kB] Get: 258 http://deb.debian.org/debian unstable/main armhf libmime-charset-perl all 1.013.1-2 [34.0 kB] Get: 259 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.4+20240414-1 [81.8 kB] Get: 260 http://deb.debian.org/debian unstable/main armhf libncurses-dev armhf 6.4+20240414-1 [309 kB] Get: 261 http://deb.debian.org/debian unstable/main armhf libthai-dev armhf 0.1.29-2 [21.5 kB] Get: 262 http://deb.debian.org/debian unstable/main armhf libxft-dev armhf 2.3.6-1+b1 [65.9 kB] Get: 263 http://deb.debian.org/debian unstable/main armhf pango1.0-tools armhf 1.52.1+ds-1 [38.0 kB] Get: 264 http://deb.debian.org/debian unstable/main armhf libpango1.0-dev armhf 1.52.1+ds-1 [153 kB] Get: 265 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 266 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 267 http://deb.debian.org/debian unstable/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 268 http://deb.debian.org/debian unstable/main armhf libpotrace0 armhf 1.16-2+b1 [22.6 kB] Get: 269 http://deb.debian.org/debian unstable/main armhf libptexenc1 armhf 2023.20230311.66589-9+b2 [43.1 kB] Get: 270 http://deb.debian.org/debian unstable/main armhf libreadline-dev armhf 8.2-4 [137 kB] Get: 271 http://deb.debian.org/debian unstable/main armhf libsharpyuv-dev armhf 1.3.2-0.4+b1 [108 kB] Get: 272 http://deb.debian.org/debian unstable/main armhf libsombok3 armhf 2.4.0-2+b1 [27.1 kB] Get: 273 http://deb.debian.org/debian unstable/main armhf libsynctex2 armhf 2023.20230311.66589-9+b2 [48.8 kB] Get: 274 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [928 kB] Get: 275 http://deb.debian.org/debian unstable/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB] Get: 276 http://deb.debian.org/debian unstable/main armhf libtexlua53-5 armhf 2023.20230311.66589-9+b2 [83.0 kB] Get: 277 http://deb.debian.org/debian unstable/main armhf libtext-unidecode-perl all 1.30-3 [101 kB] Get: 278 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [322 kB] Get: 279 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.3.2-0.4+b1 [107 kB] Get: 280 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.3.2-0.4+b1 [116 kB] Get: 281 http://deb.debian.org/debian unstable/main armhf libwebpdecoder3 armhf 1.3.2-0.4+b1 [177 kB] Get: 282 http://deb.debian.org/debian unstable/main armhf libwebp-dev armhf 1.3.2-0.4+b1 [383 kB] Get: 283 http://deb.debian.org/debian unstable/main armhf libtiffxx6 armhf 4.5.1+git230720-4 [149 kB] Get: 284 http://deb.debian.org/debian unstable/main armhf libtiff-dev armhf 4.5.1+git230720-4 [441 kB] Get: 285 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 286 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 287 http://deb.debian.org/debian unstable/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [180 kB] Get: 288 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 289 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.14-1 [693 kB] Get: 290 http://deb.debian.org/debian unstable/main armhf libunicode-linebreak-perl armhf 0.0.20190101-1+b7 [93.5 kB] Get: 291 http://deb.debian.org/debian unstable/main armhf libunwind8 armhf 1.6.2-3 [43.3 kB] Get: 292 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2 [159 kB] Get: 293 http://deb.debian.org/debian unstable/main armhf libxmu6 armhf 2:1.1.3-3+b2 [50.9 kB] Get: 294 http://deb.debian.org/debian unstable/main armhf libxpm4 armhf 1:3.5.17-1+b1 [50.0 kB] Get: 295 http://deb.debian.org/debian unstable/main armhf libxaw7 armhf 2:1.0.14-1+b2 [165 kB] Get: 296 http://deb.debian.org/debian unstable/main armhf libxfont2 armhf 1:2.0.6-1 [120 kB] Get: 297 http://deb.debian.org/debian unstable/main armhf libxkbfile1 armhf 1:1.1.0-1 [67.2 kB] Get: 298 http://deb.debian.org/debian unstable/main armhf libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 299 http://deb.debian.org/debian unstable/main armhf libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 300 http://deb.debian.org/debian unstable/main armhf libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get: 301 http://deb.debian.org/debian unstable/main armhf libxml-libxml-perl armhf 2.0207+dfsg+really+2.0134-1+b4 [297 kB] Get: 302 http://deb.debian.org/debian unstable/main armhf libxmuu1 armhf 2:1.1.3-3+b2 [21.2 kB] Get: 303 http://deb.debian.org/debian unstable/main armhf libxss-dev armhf 1:1.2.3-1 [23.1 kB] Get: 304 http://deb.debian.org/debian unstable/main armhf libxt-dev armhf 1:1.2.1-1.2 [385 kB] Get: 305 http://deb.debian.org/debian unstable/main armhf libyaml-tiny-perl all 1.74-1 [30.7 kB] Get: 306 http://deb.debian.org/debian unstable/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.2+b1 [53.0 kB] Get: 307 http://deb.debian.org/debian unstable/main armhf tex-common all 6.18 [32.5 kB] Get: 308 http://deb.debian.org/debian unstable/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 309 http://deb.debian.org/debian unstable/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 310 http://deb.debian.org/debian unstable/main armhf lmodern all 2.005-1 [9480 kB] Get: 311 http://deb.debian.org/debian unstable/main armhf mpack armhf 1.6-18+b1 [35.8 kB] Get: 312 http://deb.debian.org/debian unstable/main armhf preview-latex-style all 13.2-1 [350 kB] Get: 313 http://deb.debian.org/debian unstable/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 314 http://deb.debian.org/debian unstable/main armhf tcl8.6 armhf 8.6.14+dfsg-1 [120 kB] Get: 315 http://deb.debian.org/debian unstable/main armhf tcl8.6-dev armhf 8.6.14+dfsg-1 [940 kB] Get: 316 http://deb.debian.org/debian unstable/main armhf texinfo-lib armhf 7.1-3+b2 [205 kB] Get: 317 http://deb.debian.org/debian unstable/main armhf texinfo all 7.1-3 [1748 kB] Get: 318 http://deb.debian.org/debian unstable/main armhf texlive-binaries armhf 2023.20230311.66589-9+b2 [6062 kB] Get: 319 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 320 http://deb.debian.org/debian unstable/main armhf texlive-base all 2023.20240207-1 [22.0 MB] Get: 321 http://deb.debian.org/debian unstable/main armhf texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 322 http://deb.debian.org/debian unstable/main armhf texlive-luatex all 2023.20240207-1 [25.9 MB] Get: 323 http://deb.debian.org/debian unstable/main armhf texlive-plain-generic all 2023.20240207-1 [29.0 MB] Get: 324 http://deb.debian.org/debian unstable/main armhf texlive-extra-utils all 2023.20240207-1 [63.3 MB] Get: 325 http://deb.debian.org/debian unstable/main armhf texlive-fonts-extra all 2023.20240207-1 [629 MB] Get: 326 http://deb.debian.org/debian unstable/main armhf texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 327 http://deb.debian.org/debian unstable/main armhf texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 328 http://deb.debian.org/debian unstable/main armhf texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 329 http://deb.debian.org/debian unstable/main armhf texlive-latex-extra all 2023.20240207-1 [19.7 MB] Get: 330 http://deb.debian.org/debian unstable/main armhf tk8.6 armhf 8.6.14-1 [69.4 kB] Get: 331 http://deb.debian.org/debian unstable/main armhf tk8.6-dev armhf 8.6.14-1 [719 kB] Get: 332 http://deb.debian.org/debian unstable/main armhf x11-xkb-utils armhf 7.7+8+b1 [146 kB] Get: 333 http://deb.debian.org/debian unstable/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 334 http://deb.debian.org/debian unstable/main armhf xfonts-base all 1:1.0.5+nmu1 [5895 kB] Get: 335 http://deb.debian.org/debian unstable/main armhf xkb-data all 2.41-2 [795 kB] Get: 336 http://deb.debian.org/debian unstable/main armhf xserver-common all 2:21.1.12-1 [2391 kB] Get: 337 http://deb.debian.org/debian unstable/main armhf xvfb armhf 2:21.1.12-1 [3024 kB] Fetched 1110 MB in 1min 2s (17.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19440 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19756 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc-dev:armhf. Preparing to unpack .../274-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ... Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../275-libxss1_1%3a1.2.3-1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../276-libtk8.6_8.6.14-1_armhf.deb ... Unpacking libtk8.6:armhf (8.6.14-1) ... Selecting previously unselected package libunicode-linebreak-perl. Preparing to unpack .../277-libunicode-linebreak-perl_0.0.20190101-1+b7_armhf.deb ... 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Unpacking xserver-common (2:21.1.12-1) ... Selecting previously unselected package xvfb. Preparing to unpack .../324-xvfb_2%3a21.1.12-1_armhf.deb ... Unpacking xvfb (2:21.1.12-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libgraphite2-3:armhf (1.3.14-2) ... Setting up liblcms2-2:armhf (2.14-2+b1) ... Setting up libpixman-1-0:armhf (0.42.2-1+b1) ... Setting up libsharpyuv0:armhf (1.3.2-0.4+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libpixman-1-dev:armhf (0.42.2-1+b1) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up libzstd-dev:armhf (1.5.5+dfsg2-2) ... Setting up bsdextrautils (2.40-7) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.75) ... Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up mpack (1.6-18+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglvnd0:armhf (1.7.0-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-9) ... Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.61.0-1+b1) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up libwebpdecoder3:armhf (1.3.2-0.4+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up xkb-data (2.41-2) ... Setting up liblzo2-2:armhf (2.10-2+b1) ... Setting up libcom-err2:armhf (1.47.0-2.4) ... Setting up file (1:5.45-3) ... Setting up texinfo-lib (7.1-3+b2) ... Setting up libffi-dev:armhf (3.4.6-1) ... Setting up libunwind8:armhf (1.6.2-3) ... Setting up libyaml-tiny-perl (1.74-1) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libpcre2-16-0:armhf (10.42-4+b1) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up libkrb5support0:armhf (1.20.1-6+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 27 13:31:08 UTC 2024. Universal Time is now: Sat Apr 27 13:31:08 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.11-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libgraphite2-dev:armhf (1.3.14-2) ... Setting up libfontenc1:armhf (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:armhf (10.42-4+b1) ... Setting up libglib2.0-0t64:armhf (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libglib2.0-data (2.78.4-7) ... Setting up libpkgconf3:armhf (1.8.1-1+b2) ... Setting up libasound2t64:armhf (1.2.11-1+b1) ... Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.2+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3) ... Setting up libnspr4:armhf (2:4.35-1.1+b1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libteckit0:armhf (2.5.12+ds1-1) ... Setting up bash-completion (1:2.11-8) ... Setting up uuid-dev:armhf (2.40-7) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13+b2) ... Setting up libncurses6:armhf (6.4+20240414-1) ... Setting up libdbus-1-3:armhf (1.14.10-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:armhf (2023.20230311.66589-9+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up icu-devtools (72.1-4+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libsepol-dev:armhf (3.5-2) ... Setting up libpcsclite1:armhf (2.0.3-1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up gir1.2-glib-2.0:armhf (1.78.1-19) ... Setting up libsensors5:armhf (1:3.6.0-9) ... Setting up liblerc-dev:armhf (4.0.0+ds-4+b1) ... Setting up libk5crypto3:armhf (1.20.1-6+b1) ... Setting up libglapi-mesa:armhf (24.0.6-1) ... Setting up libkpathsea6:armhf (2023.20230311.66589-9+b2) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up libvulkan1:armhf (1.3.280.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.3.2-0.4+b1) ... Setting up liblzma-dev:armhf (5.6.1+really5.4.5-1) ... Setting up libgif7:armhf (5.2.2-1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up libpcre2-posix3:armhf (10.42-4+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up gir1.2-glib-2.0-dev:armhf (1.78.1-19) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up libmime-charset-perl (1.013.1-2) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libgtk2.0-common (2.24.33-4) ... Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up libssh2-1t64:armhf (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libsharpyuv-dev:armhf (1.3.2-0.4+b1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgfortran-13-dev:armhf (13.2.0-23) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:armhf (1.3.2-0.4+b1) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up libtiffxx6:armhf (4.5.1+git230720-4) ... Setting up libdeflate-dev:armhf (1.20-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:armhf (72.1-4+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libbrotli-dev:armhf (1.1.0-2+b3) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsynctex2:armhf (2023.20230311.66589-9+b2) ... Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up libpotrace0:armhf (1.16-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-23) ... Setting up libblkid-dev:armhf (2.40-7) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up tcl8.6 (8.6.14+dfsg-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4+20240414-1) ... Setting up libxcb1:armhf (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libxcb-xfixes0:armhf (1.17.0-1) ... Setting up libatk1.0-0t64:armhf (2.52.0-1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libpcre2-dev:armhf (10.42-4+b1) ... Setting up libice-dev:armhf (2:1.0.10-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.17.0-1) ... Setting up libselinux1-dev:armhf (3.5-2+b2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libfribidi-dev:armhf (1.0.13-3+b1) ... Setting up libxcb-glx0:armhf (1.17.0-1) ... Setting up libwebpdemux2:armhf (1.3.2-0.4+b1) ... Setting up tcl8.6-dev:armhf (8.6.14+dfsg-1) ... Setting up libedit2:armhf (3.1-20230828-1) ... Setting up libpng-dev:armhf (1.6.43-5) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:armhf (0.8-13+b2) ... Setting up libjpeg-dev:armhf (1:2.1.5-3) ... Setting up libjbig-dev:armhf (2.1-6.1+b1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libglib2.0-bin (2.78.4-7) ... Setting up libnss3:armhf (2:3.99-1) ... Setting up libxcb-shm0:armhf (1.17.0-1) ... Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up pkgconf:armhf (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:armhf (1.17.0-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libwebp-dev:armhf (1.3.2-0.4+b1) ... Setting up libptexenc1:armhf (2023.20230311.66589-9+b2) ... Setting up libllvm17t64:armhf (1:17.0.6-10) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libtiff-dev:armhf (4.5.1+git230720-4) ... Setting up libxcb-sync1:armhf (1.17.0-1) ... Setting up gfortran-13 (13.2.0-23) ... Setting up x11proto-core-dev (2024.1-1) ... Setting up shared-mime-info (2.4-4) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up libxcb-dri2-0:armhf (1.17.0-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.120-2) ... Setting up libdatrie-dev:armhf (0.2.13-3) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxcb-randr0:armhf (1.17.0-1) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-3+b3) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libxkbfile1:armhf (1:1.1.0-1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libxcomposite1:armhf (1:0.4.5-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxfont2:armhf (1:2.0.6-1) ... Setting up libavahi-client3:armhf (0.8-13+b2) ... Setting up libmount-dev:armhf (2.40-7) ... Setting up libxmuu1:armhf (2:1.1.3-3+b2) ... Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... Setting up libxcb-dri3-0:armhf (1.17.0-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.41-4) ... Setting up libx11-xcb1:armhf (2:1.8.7-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.120-2) ... Setting up libharfbuzz-icu0:armhf (8.3.0-2+b1) ... Setting up libxdamage1:armhf (1:1.1.6-1) ... Setting up libxcb1-dev:armhf (1.17.0-1) ... Setting up libxpm4:armhf (1:3.5.17-1+b1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libcurl4t64:armhf (8.7.1-3) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up libsombok3:armhf (2.4.0-2+b1) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libdrm-radeon1:armhf (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ... Setting up libgl1-mesa-dri:armhf (24.0.6-1) ... Setting up libx11-dev:armhf (2:1.8.7-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libharfbuzz-gobject0:armhf (8.3.0-2+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up libreadline-dev:armhf (8.2-4) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.18.0-3+b1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libfreetype-dev:armhf (2.13.2+dfsg-1+b4) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxcb-shm0-dev:armhf (1.17.0-1) ... Setting up xfonts-base (1:1.0.5+nmu1) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.3) ... Setting up libharfbuzz-cairo0:armhf (8.3.0-2+b1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:armhf (8.7.1-3) ... Setting up libunicode-linebreak-perl (0.0.20190101-1+b7) ... Setting up libxinerama1:armhf (2:1.1.4-3) ... Setting up libxt6t64:armhf (1:1.2.1-1.2) ... Setting up libxrandr2:armhf (2:1.5.4-1) ... Setting up libxcb-render0-dev:armhf (1.17.0-1) ... Setting up openjdk-17-jre-headless:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxext-dev:armhf (2:1.3.4-1+b1) ... Setting up libthai-dev:armhf (0.1.29-2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up xauth (1:1.1.2-1) ... Setting up lmodern (2.005-1) ... Setting up libharfbuzz-subset0:armhf (8.3.0-2+b1) ... Setting up libcairo-gobject2:armhf (1.18.0-3+b1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1.1) ... Setting up libcups2t64:armhf (2.4.7-1.2+b1) ... Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up libcairo-script-interpreter2:armhf (1.18.0-3+b1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libxmu6:armhf (2:1.1.3-3+b2) ... Setting up gir1.2-freedesktop:armhf (1.78.1-19) ... Setting up libglx-mesa0:armhf (24.0.6-1) ... Setting up libpangoxft-1.0-0:armhf (1.52.1+ds-1) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up libglx0:armhf (1.7.0-1) ... Setting up libfontconfig-dev:armhf (2.15.0-1.1) ... Setting up libxtst6:armhf (2:1.2.3-1.1) ... Setting up preview-latex-style (13.2-1) ... Setting up libtk8.6:armhf (8.6.14-1) ... Setting up libxcursor1:armhf (1:1.2.1-1) ... Setting up pango1.0-tools (1.52.1+ds-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libxaw7:armhf (2:1.0.14-1+b2) ... Setting up libxss-dev:armhf (1:1.2.3-1) ... Setting up gir1.2-harfbuzz-0.0:armhf (8.3.0-2+b1) ... Setting up gir1.2-pango-1.0:armhf (1.52.1+ds-1) ... Setting up python3-packaging (24.0-1) ... Setting up libgl1:armhf (1.7.0-1) ... Setting up libxt-dev:armhf (1:1.2.1-1.2) ... Setting up gir1.2-freedesktop-dev:armhf (1.78.1-19) ... Setting up libgtk2.0-0t64:armhf (2.24.33-4) ... Setting up texinfo (7.1-3) ... Running mktexlsr. This may take some time. ... done. Setting up texlive-binaries (2023.20230311.66589-9+b2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libxft-dev:armhf (2.3.6-1+b1) ... Setting up tk8.6 (8.6.14-1) ... Setting up libglib2.0-dev-bin (2.78.4-7) ... Setting up libfontconfig1-dev:armhf (2.15.0-1.1) ... Setting up texlive-luatex (2023.20240207-1) ... Setting up x11-xkb-utils (7.7+8+b1) ... Setting up texlive-plain-generic (2023.20240207-1) ... Setting up libglib2.0-dev:armhf (2.78.4-7) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up texlive-extra-utils (2023.20240207-1) ... Setting up texlive-fonts-extra (2023.20240207-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up tk8.6-dev:armhf (8.6.14-1) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up libcairo2-dev:armhf (1.18.0-3+b1) ... Setting up xserver-common (2:21.1.12-1) ... Setting up libharfbuzz-dev:armhf (8.3.0-2+b1) ... Setting up xvfb (2:21.1.12-1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up libpango1.0-dev:armhf (1.52.1+ds-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:armhf (17.0.11+9-1) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk-headless (2:1.17-75) ... Setting up default-jdk (2:1.17-75) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/r-base-4.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-base_4.4.0-2_source.changes dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build *** configure *** #automake #autoconf dh_testdir R_SHELL=/bin/bash \ mkdir_p="/bin/mkdir -p" \ MKDIR_P="/bin/mkdir -p" \ R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_BZIPCMD=/bin/bzip2 \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ TAR=/bin/tar \ LIBnn=lib \ AWK=/usr/bin/awk \ DD=/bin/dd \ GREP=/bin/grep \ FGREP="/bin/grep -F" \ EGREP="/bin/grep -E" \ SED=/bin/sed \ GETWD="/bin/pwd" \ CC=gcc \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection" \ FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection" \ CPPFLAGS= \ LDFLAGS="-Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-long-double \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build arm-linux-gnueabihf checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for /bin/tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether the compiler supports GNU Objective C... no checking whether gcc accepts -g... no checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... no checking whether gcc -std=gnu2x is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... /usr/bin/awk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... 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gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/arm-linux-gnueabihf/13 -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/13/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int 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none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking 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exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime, gmtime, localtime work correctly in 2020... yes checking whether mktime sets errno... yes checking whether mktime works correctly after 2037... yes checking whether mktime works correctly before 1902... yes checking whether mktime works correctly in 1969... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... no configure: searching for BLIS checking for sgemm_ in -lblis... no configure: searching for ATLAS checking for ATL_xerbla in -latlas... no configure: searching for PhiPACK checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no configure: searching for IBM ESSL checking for dgemm_ in -lblas... 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(cached) -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for arm-unknown-linux-gnueabihf Source directory: . Installation directory: /usr C compiler: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 Fortran fixed-form compiler: gfortran -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection Default C++ compiler: g++ -std=gnu++17 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 C++11 compiler: g++ -std=gnu++11 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 C++14 compiler: g++ -std=gnu++14 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 C++17 compiler: g++ -std=gnu++17 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 C++20 compiler: g++ -std=gnu++20 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 C++23 compiler: g++ -std=gnu++23 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 Fortran free-form compiler: gfortran -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl, libdeflate Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling, libdeflate for lazyload Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no configure: WARNING: 32-bit build -- this is little tested touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection" \ FCFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection" \ CC=gcc \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' mkdir -p -- ../../include make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o ranlib libtre.a make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c uncmin.c -o uncmin.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dchdc.f -o dchdc.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dpbfa.f -o dpbfa.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dpbsl.f -o dpbsl.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dpoco.f -o dpoco.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dpodi.f -o dpodi.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dpofa.f -o dpofa.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dposl.f -o dposl.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dqrdc.f -o dqrdc.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dqrdc2.f -o dqrdc2.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dqrls.f -o dqrls.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dqrsl.f -o dqrsl.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dqrutl.f -o dqrutl.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dsvdc.f -o dsvdc.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dtrco.f -o dtrco.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.0"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making flexiblas.d from flexiblas.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making machine.d from machine.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Rdynload.c -o Rdynload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Renviron.c -o Renviron.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c RNG.c -o RNG.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c agrep.c -o agrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c altclasses.c -o altclasses.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c altrep.c -o altrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c apply.c -o apply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c arithmetic.c -o arithmetic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c array.c -o array.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c attrib.c -o attrib.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bind.c -o bind.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c builtin.c -o builtin.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c character.c -o character.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c coerce.c -o coerce.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c complex.c -o complex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c connections.c -o connections.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c context.c -o context.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c cum.c -o cum.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dcf.c -o dcf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c datetime.c -o datetime.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c debug.c -o debug.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c deparse.c -o deparse.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dotcode.c -o dotcode.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dounzip.c -o dounzip.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dstruct.c -o dstruct.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c duplicate.c -o duplicate.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c edit.c -o edit.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c engine.c -o engine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c envir.c -o envir.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c errors.c -o errors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c eval.c -o eval.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c flexiblas.c -o flexiblas.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c format.c -o format.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gevents.c -o gevents.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gram.c -o gram.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gram-ex.c -o gram-ex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c grep.c -o grep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c identical.c -o identical.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c inlined.c -o inlined.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c inspect.c -o inspect.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c internet.c -o internet.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c iosupport.c -o iosupport.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lapack.c -o lapack.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c list.c -o list.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c localecharset.c -o localecharset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c logic.c -o logic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c machine.c -o machine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o main.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mapply.c -o mapply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c match.c -o match.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c memory.c -o memory.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c names.c -o names.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c objects.c -o objects.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c paste.c -o paste.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c platform.c -o platform.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plotmath.c -o plotmath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c print.c -o print.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c printarray.c -o printarray.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c printvector.c -o printvector.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c printutils.c -o printutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c qsort.c -o qsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c radixsort.c -o radixsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c raw.c -o raw.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c registration.c -o registration.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c relop.c -o relop.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rlocale.c -o rlocale.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c saveload.c -o saveload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c scan.c -o scan.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c seq.c -o seq.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c serialize.c -o serialize.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sort.c -o sort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c source.c -o source.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c split.c -o split.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sprintf.c -o sprintf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c startup.c -o startup.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c subassign.c -o subassign.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c subscript.c -o subscript.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c subset.c -o subset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c summary.c -o summary.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sysutils.c -o sysutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c times.c -o times.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c unique.c -o unique.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c version.c -o version.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c g_her_glyph.c -o g_her_glyph.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' mkdir -p -- /build/reproducible-path/r-base-4.4.0/bin/exec mkdir -p -- /build/reproducible-path/r-base-4.4.0/lib make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' mkdir -p -- /build/reproducible-path/r-base-4.4.0/modules make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Lapack.c -o Lapack.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ../../main/flexiblas.c -o flexiblas.o gcc -shared -L"../../../lib" -Wl,-z,relro -o lapack.so Lapack.o flexiblas.o -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lR -lm gcc -I/usr/include/libpng16 -I/usr/include/arm-linux-gnueabihf -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' mkdir -p -- ../../library make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pdscan.c -o pdscan.o gcc -shared -L../../../../lib -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c hashtab.c -o hashtab.o gcc -shared -L../../../../lib -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16 -L"../../../../../lib" -lR -lm make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c stl.f -o stl.o gfortran -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making typeset.d from typeset.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c path.c -o path.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c typeset.c -o typeset.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' you should 'make docs' now ... make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' Copying source files make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/nmath/standalone=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' R_GZIPCMD="/bin/gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.0"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/lib/libR.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/bin/exec/R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' /build/reproducible-path/r-base-4.4.0/modules/R_X11.so is unchanged /build/reproducible-path/r-base-4.4.0/modules/R_de.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' building system startup profile make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' building package 'translations' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' building package 'tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' you should 'make docs' now ... make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' creating doc/NEWS creating doc/NEWS.pdf make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' installing parsed Rd make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' building/updating package metadata ... make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' writing package indices make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' /usr/bin/make javaconf make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.0"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/lib/libR.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/bin/exec/R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' /build/reproducible-path/r-base-4.4.0/modules/R_X11.so is unchanged /build/reproducible-path/r-base-4.4.0/modules/R_de.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' building system startup profile make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' building package 'translations' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' building package 'tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/bin/java Java version : 17.0.11 Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: 'gcc (Debian 13.2.0-23) 13.2.0' make[3]: Entering directory '/tmp/Rjavareconf.ZhlH6I' gcc -I"/build/reproducible-path/r-base-4.4.0/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest.o gcc -shared -L/build/reproducible-path/r-base-4.4.0/lib -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/build/reproducible-path/r-base-4.4.0/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.ZhlH6I' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /build/reproducible-path/r-base-4.4.0 Done. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' touch make-arch-stamp *** make-indep *** /usr/bin/make -k docs make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/build/reproducible-path/r-base-4.4.0"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/lib/libR.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' /build/reproducible-path/r-base-4.4.0/bin/exec/R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' /build/reproducible-path/r-base-4.4.0/modules/R_X11.so is unchanged /build/reproducible-path/r-base-4.4.0/modules/R_de.so is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' building system startup profile make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/profile' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' building package 'translations' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/translations' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' building package 'base' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' building package 'tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' installing parsed Rd make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' building/updating package metadata ... make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' writing package indices make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' (cd doc/manual && /usr/bin/make html) make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' /usr/bin/make info make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' (cd doc/manual && \ /usr/bin/make refman.pdf R-admin.pdf R-data.pdf R-exts.pdf \ R-FAQ.pdf R-intro.pdf R-ints.pdf R-lang.pdf) make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ............................................ collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ................ collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX .......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: reference index ... This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] No file refman.toc. (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1{/usr/share/texli ve/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}] [2] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 149--157 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 337--340 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2241] Underfull \hbox (badness 1789) in paragraph at lines 9693--9695 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2242] [2243] [2244] [2245] Underfull \hbox (badness 2600) in paragraph at lines 9917--9920 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] Underfull \hbox (badness 1097) in paragraph at lines 10554--10557 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2255] [2256] Underfull \hbox (badness 3000) in paragraph at lines 10690--10695 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Underfull \hbox (badness 2134) in paragraph at lines 11285--11290 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2266] Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 1824) in paragraph at lines 11839--11843 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2275] [2276] [2277] [2278] [2279] [2280] [2281] Underfull \hbox (badness 4060) in paragraph at lines 12284--12287 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12307--12307 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2282] [2283] [2284] [2285] Underfull \hbox (badness 2150) in paragraph at lines 12562--12564 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2286] [2287] [2288] [2289] Underfull \hbox (badness 10000) in paragraph at lines 12782--12786 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12815--12821 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2290] Underfull \hbox (badness 2762) in paragraph at lines 12830--12836 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2291] [2292] Underfull \hbox (badness 1009) in paragraph at lines 13005--13017 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 4779) in paragraph at lines 13045--13047 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and [2293] Underfull \hbox (badness 1077) in paragraph at lines 13075--13082 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2294] [2295] [2296] [2297] [2298] [2299] Underfull \hbox (badness 3780) in paragraph at lines 13500--13506 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via [2300] Underfull \hbox (badness 2635) in paragraph at lines 13518--13521 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2301] [2302] [2303] Underfull \hbox (badness 2302) in paragraph at lines 13728--13730 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2304] [2305] [2306] [2307] [2308] Underfull \hbox (badness 4441) in paragraph at lines 14027--14032 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14036--14039 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2309] [2310] [2311] [2312] [2313] [2314] [2315] Underfull \hbox (badness 2932) in paragraph at lines 14467--14474 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14467--14474 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 149--157 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 337--340 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . 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Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2241] Underfull \hbox (badness 1789) in paragraph at lines 9693--9695 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2242] [2243] [2244] [2245] Underfull \hbox (badness 2600) in paragraph at lines 9917--9920 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] Underfull \hbox (badness 1097) in paragraph at lines 10554--10557 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2255] [2256] Underfull \hbox (badness 3000) in paragraph at lines 10690--10695 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Underfull \hbox (badness 2134) in paragraph at lines 11285--11290 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2266] Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 1824) in paragraph at lines 11839--11843 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2275] [2276] [2277] [2278] [2279] [2280] [2281] Underfull \hbox (badness 4060) in paragraph at lines 12284--12287 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12307--12307 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2282] [2283] [2284] [2285] Underfull \hbox (badness 2150) in paragraph at lines 12562--12564 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2286] [2287] [2288] [2289] Underfull \hbox (badness 10000) in paragraph at lines 12782--12786 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12815--12821 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2290] Underfull \hbox (badness 2762) in paragraph at lines 12830--12836 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2291] [2292] Underfull \hbox (badness 1009) in paragraph at lines 13005--13017 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 4779) in paragraph at lines 13045--13047 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and [2293] Underfull \hbox (badness 1077) in paragraph at lines 13075--13082 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2294] [2295] [2296] [2297] [2298] [2299] Underfull \hbox (badness 3780) in paragraph at lines 13500--13506 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via [2300] Underfull \hbox (badness 2635) in paragraph at lines 13518--13521 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2301] [2302] [2303] Underfull \hbox (badness 2302) in paragraph at lines 13728--13730 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2304] [2305] [2306] [2307] [2308] Underfull \hbox (badness 4441) in paragraph at lines 14027--14032 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14036--14039 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2309] [2310] [2311] [2312] [2313] [2314] [2315] Underfull \hbox (badness 2932) in paragraph at lines 14467--14474 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14467--14474 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. 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[]\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used [2319] Underfull \hbox (badness 6510) in paragraph at lines 14777--14781 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14784--14787 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14784--14787 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] Underfull \hbox (badness 10000) in paragraph at lines 15457--15462 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15457--15462 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15463--15465 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. 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Transcript written on refman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] Underfull \hbox (badness 10000) in paragraph at lines 1434--1440 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools44/ rtools. html[]@textrm )[]. [17] [18] Chapter 4 [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1757--1767 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1905--1905 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2137--2145 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2345--2357 @textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and Overfull \hbox (78.17732pt too wide) in paragraph at lines 2367--2367 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2633--2639 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64 /contrib/@textttsl 4.y[] @textrm or [32] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2687--2687 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3255--3255 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3469--3471 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3566--3566 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4915--4915 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5116--5116 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5218--5218 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5220--5220 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] [68] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5330--5330 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [69] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5362--5362 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5371--5372 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5498--5498 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5499--5499 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5621--5621 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5654 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5757--5757 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5766--5775 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5888--5888 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5893--5893 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5911--5911 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5934--5934 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] No file R-admin.vrs. (Concept index) [80] No file R-admin.cps. (Environment variable index) [81] No file R-admin.ens. [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (85 pages, 473300 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] Underfull \hbox (badness 10000) in paragraph at lines 1434--1440 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools44/ rtools. html[]@textrm )[]. [17] [18] Chapter 4 [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1757--1767 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1905--1905 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2137--2145 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2345--2357 @textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and Overfull \hbox (78.17732pt too wide) in paragraph at lines 2367--2367 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2633--2639 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64 /contrib/@textttsl 4.y[] @textrm or [32] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2687--2687 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3255--3255 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3469--3471 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3566--3566 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4915--4915 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5116--5116 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5218--5218 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5220--5220 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] [68] l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. Overfull \hbox (32.18782pt too wide) in paragraph at lines 5330--5330 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [69] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5362--5362 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5371--5372 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5498--5498 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5499--5499 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5621--5621 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5654 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5757--5757 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5766--5775 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5888--5888 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5893--5893 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5911--5911 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5934--5934 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.vrs) (Concept index) [80] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.cps) (Environment variable index) [81] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.ens) [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (87 pages, 516122 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] Underfull \hbox (badness 10000) in paragraph at lines 1434--1440 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools44/ rtools. html[]@textrm )[]. [17] [18] Chapter 4 [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1757--1767 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1905--1905 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2137--2145 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2345--2357 @textrm (avoiding @texttt autoconf[]@textrm 's de-fault @texttt -g[]@textrm ). As from R 4.3.0, @texttt R CMD INSTALL[] @textrm and Overfull \hbox (78.17732pt too wide) in paragraph at lines 2367--2367 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2633--2639 []@texttt "mac.binary"[]@textrm : lo-cated at @texttt bin/macosx/big-sur-arm64 /contrib/@textttsl 4.y[] @textrm or [32] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2687--2687 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3255--3255 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3469--3471 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3566--3566 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4915--4915 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5116--5116 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5218--5218 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5220--5220 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] [68] l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5267: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. Overfull \hbox (32.18782pt too wide) in paragraph at lines 5330--5330 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [69] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5362--5362 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5371--5372 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [70] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5498--5498 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5499--5499 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [71] [72] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5621--5621 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| Overfull \hbox (9.18199pt too wide) in paragraph at lines 1--5654 @texttt OpenMathLib/ OpenBLAS/ releases[][]@textrm ) by sym-link-ing @texttt /opt/OpenBLAS/lib/libopenblas.dylib[] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5757--5757 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5766--5775 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [75] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5888--5888 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] [76] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5893--5893 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5911--5911 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 5934--5934 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [77] [78] (Function and variable index) [79] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.vrs) (Concept index) [80] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.cps) (Environment variable index) [81] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-admin.ens) [82] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (87 pages, 516122 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.t2d/pdf/xtr/R-data.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1 [2] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 442--445 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1800--1806 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] No file R-data.vrs. (Concept index) [34] No file R-data.cps. [35] ) (see the transcript file for additional information) Output written on R-data.pdf (38 pages, 266564 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.t2d/pdf/xtr/R-data.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc [-1]) [-2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.aux ) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 442--445 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1800--1806 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.vrs [34]) (Concept index) [35] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 302815 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.t2d/pdf/xtr/R-data.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc [-1]) [-2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.aux ) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 442--445 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1227--1239 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1800--1806 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.vrs [34]) (Concept index) [35] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 302822 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1322--1324 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1336--1338 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1604--1604 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [21] Underfull \hbox (badness 10000) in paragraph at lines 1635--1642 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2041--2041 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2285--2285 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2832--2832 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 3024--3030 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3111--3111 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3356--3356 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4756--4756 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4990--4990 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5009--5009 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [65] [66] [67] [68] [69] [70] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5474--5474 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5476--5476 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5477--5477 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5492--5492 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [71] [72] [73] [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5872--5872 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6034--6037 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [78] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6112--6112 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [79] [80] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6254--6254 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [81] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6310--6310 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [82] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6386--6386 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6398--6398 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Overfull \hbox (94.10985pt too wide) in paragraph at lines 6413--6413 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] [83] Underfull \hbox (badness 10000) in paragraph at lines 6446--6447 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [84] [85] [86] [87] [88] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6852--6852 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [89] [90] Chapter 2 [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 8128--8135 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 8340--8345 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [108] [109] [110] Chapter 3 [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9111--9111 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [118] Chapter 4 [119] [120] [121] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9383--9383 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [122] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9424--9424 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [123] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9528--9528 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9558--9567 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [124] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9828--9840 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9844--9845 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [128] [129] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9983--9983 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (33.15736pt too wide) in paragraph at lines 10016--10019 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [130] Underfull \hbox (badness 10000) in paragraph at lines 10115--10119 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [131] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10131--10131 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10132--10132 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10135--10135 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10143--10143 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10175--10179 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [132] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10198--10198 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10243--10243 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10246--10246 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [133] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10325--10325 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 10568--10570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : Overfull \hbox (124.16682pt too wide) in paragraph at lines 10635--10635 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] [138] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10654--10654 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10665--10665 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10685--10685 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10694--10694 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10695--10695 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11511--11511 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11575--11575 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [150] [151] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11739--11739 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [152] [153] [154] [155] [156] [157] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12176--12176 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13047--13047 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [169] Underfull \hbox (badness 10000) in paragraph at lines 13197--13201 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [170] [171] [172] [173] [174] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13760--13760 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [177] [178] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13884--13884 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [179] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13889--13889 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13944--13944 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13957--13957 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [180] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14056--14056 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [181] [182] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14205--14205 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [183] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14296--14296 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [184] [185] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14391--14391 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15191--15191 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15209--15214 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 15942--15946 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [205] Warning: unbalanced parentheses in @def... [206] [207] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16165--16165 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216] [217] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16928--16928 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [218] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16971--16971 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16986--16986 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [219] [220] [221] [222] [223] [224] [225] [226] [227] (Function and variable index) [228] No file R-exts.vrs. (Concept index) [229] No file R-exts.cps. [230] ) (see the transcript file for additional information) Output written on R-exts.pdf (233 pages, 990507 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.aux ) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1322--1324 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1336--1338 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1604--1604 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [21] Underfull \hbox (badness 10000) in paragraph at lines 1635--1642 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2041--2041 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2285--2285 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2832--2832 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 3024--3030 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3111--3111 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3356--3356 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4756--4756 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4990--4990 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5009--5009 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [65] [66] [67] [68] [69] [70] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5474--5474 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5476--5476 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5477--5477 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5492--5492 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [71] [72] [73] [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5872--5872 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6034--6037 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [78] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6112--6112 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [79] [80] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6254--6254 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [81] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6310--6310 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [82] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6386--6386 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6398--6398 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Overfull \hbox (94.10985pt too wide) in paragraph at lines 6413--6413 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] [83] Underfull \hbox (badness 10000) in paragraph at lines 6446--6447 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [84] [85] [86] [87] [88] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6852--6852 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [89] [90] Chapter 2 [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 8128--8135 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 8340--8345 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [108] [109] [110] Chapter 3 [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9111--9111 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [118] Chapter 4 [119] [120] [121] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9383--9383 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [122] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9424--9424 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [123] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9528--9528 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9558--9567 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [124] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9828--9840 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9844--9845 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [128] [129] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9983--9983 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (33.15736pt too wide) in paragraph at lines 10016--10019 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [130] Underfull \hbox (badness 10000) in paragraph at lines 10115--10119 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [131] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10131--10131 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10132--10132 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10135--10135 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10143--10143 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10175--10179 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [132] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10198--10198 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10243--10243 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10246--10246 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [133] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10325--10325 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 10568--10570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : Overfull \hbox (124.16682pt too wide) in paragraph at lines 10635--10635 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] [138] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10654--10654 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10665--10665 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10685--10685 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10694--10694 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10695--10695 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11511--11511 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11575--11575 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [150] [151] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11739--11739 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [152] [153] [154] [155] [156] [157] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12176--12176 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13047--13047 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [169] Underfull \hbox (badness 10000) in paragraph at lines 13197--13201 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [170] [171] [172] [173] [174] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13760--13760 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [177] [178] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13884--13884 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [179] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13889--13889 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13944--13944 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13957--13957 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [180] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14056--14056 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [181] [182] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14205--14205 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [183] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14296--14296 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [184] [185] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14391--14391 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15191--15191 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15209--15214 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 15942--15946 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [205] Warning: unbalanced parentheses in @def... [206] [207] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16165--16165 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216] [217] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16928--16928 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [218] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16971--16971 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16986--16986 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [219] [220] [221] [222] [223] [224] [225] [226] [227] (Function and variable index) [228] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.vrs [229] [230] [231] [232]) (Concept index) [233] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.cps [234]) [235] ) (see the transcript file for additional information) Output written on R-exts.pdf (242 pages, 1055238 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.toc) (Acknowledgements) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.aux ) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1322--1324 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1336--1338 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1604--1604 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [21] Underfull \hbox (badness 10000) in paragraph at lines 1635--1642 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2041--2041 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2285--2285 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2832--2832 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 3024--3030 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] [40] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3111--3111 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3356--3356 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4756--4756 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [62] [63] [64] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4990--4990 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5009--5009 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [65] [66] [67] [68] [69] [70] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5474--5474 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5476--5476 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5477--5477 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5492--5492 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [71] [72] [73] [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5872--5872 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6034--6037 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [78] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6112--6112 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [79] [80] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6254--6254 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [81] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6310--6310 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [82] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6386--6386 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6398--6398 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Overfull \hbox (94.10985pt too wide) in paragraph at lines 6413--6413 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] [83] Underfull \hbox (badness 10000) in paragraph at lines 6446--6447 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [84] [85] [86] [87] [88] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6852--6852 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [89] [90] Chapter 2 [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 8128--8135 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 8340--8345 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [108] [109] [110] Chapter 3 [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9111--9111 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [118] Chapter 4 [119] [120] [121] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9383--9383 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [122] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9424--9424 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [123] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9528--9528 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9558--9567 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [124] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9828--9840 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9844--9845 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [128] [129] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9983--9983 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (33.15736pt too wide) in paragraph at lines 10016--10019 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [130] Underfull \hbox (badness 10000) in paragraph at lines 10115--10119 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [131] Overfull \hbox (112.66945pt too wide) in paragraph at lines 10131--10131 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (170.15633pt too wide) in paragraph at lines 10132--10132 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 10135--10135 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (37.93651pt too wide) in paragraph at lines 10143--10143 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10175--10179 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. [132] Overfull \hbox (72.42863pt too wide) in paragraph at lines 10198--10198 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10243--10243 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10246--10246 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [133] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10325--10325 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 10568--10570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : Overfull \hbox (124.16682pt too wide) in paragraph at lines 10635--10635 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] [138] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10654--10654 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10665--10665 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10685--10685 [] @tex ttt 1[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10694--10694 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10695--10695 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11511--11511 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11575--11575 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [150] [151] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11739--11739 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [152] [153] [154] [155] [156] [157] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12176--12176 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13047--13047 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [169] Underfull \hbox (badness 10000) in paragraph at lines 13197--13201 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [170] [171] [172] [173] [174] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13760--13760 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [177] [178] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13884--13884 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [179] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13889--13889 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13944--13944 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13957--13957 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [180] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14056--14056 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [181] [182] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14205--14205 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [183] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14296--14296 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [184] [185] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14391--14391 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [186] [187] [188] [189] [190] [191] [192] [193] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15191--15191 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15209--15214 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 15942--15946 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [205] Warning: unbalanced parentheses in @def... [206] [207] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16165--16165 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [208] [209] [210] [211] [212] Chapter 7 [213] [214] Chapter 8 [215] [216] [217] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16928--16928 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [218] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16971--16971 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16986--16986 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [219] [220] [221] [222] [223] [224] [225] [226] [227] (Function and variable index) [228] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.vrs [229] [230] [231] [232]) (Concept index) [233] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-exts.cps [234]) [235] ) (see the transcript file for additional information) Output written on R-exts.pdf (242 pages, 1055245 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u pdmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1] Cross reference values unknown; you must run TeX again. [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 656--661 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1817--1817 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3130--3144 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 350842 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) [1{/var/lib/texmf/fonts/map/pdftex/u pdmap/pdftex.map}] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-FAQ.aux) Chapter 2 [1] [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 656--661 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1529--1532 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1817--1817 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3130--3144 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 367979 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4839--4841 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5254--5264 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] No file R-intro.vrs. Appendix E [102] No file R-intro.cps. Appendix F [103] [104] ) (see the transcript file for additional information) Output written on R-intro.pdf (107 pages, 572270 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (Preface) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4839--4841 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5254--5264 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 623954 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.t exi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.toc) (Preface) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] [38] [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4839--4841 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5254--5264 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5734--5734 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 623979 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3137--3143 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4552--4557 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71] (Function and variable index) [72] [73] No file R-ints.vrs. (Concept index) [74] No file R-ints.cps. [75] ) (see the transcript file for additional information) Output written on R-ints.pdf (78 pages, 420740 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3137--3143 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4552--4557 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71] (Function and variable index) [72] [73] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.vrs [74] [75]) (Concept index) [76] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.cps) [77] ) (see the transcript file for additional information) Output written on R-ints.pdf (82 pages, 469343 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc [-1] [-2]) [-3] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2019--2019 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3137--3143 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3842--3846 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4180--4188 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4552--4557 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] [65] Chapter 9 [66] [67] Chapter 10 [68] Chapter 11 [69] Chapter 12 [70] [71] (Function and variable index) [72] [73] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.vrs [74] [75]) (Concept index) [76] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-ints.cps) [77] ) (see the transcript file for additional information) Output written on R-ints.pdf (82 pages, 469334 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] No file R-lang.vrs. (Concept Index) [60] No file R-lang.cps. Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 348678 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 391309 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.tex i (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/build/reproducible-path/r-base-4.4.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/build/reproducible-path/r-base-4.4.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/build/reproducible-path/r-base-4.4.0/doc/manual/version.texi) [1{/var/lib/tex mf/fonts/map/pdftex/updmap/pdftex.map}] [2] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.toc) Chapter 1 (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/build/reproducible-path/r-base-4.4.0/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 391304 bytes). Transcript written on R-lang.log. make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' /usr/bin/make -k pdf make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' PDF/LaTeX documentation: full reference index ... 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Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. 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Transcript written on fullrefman.log. This is makeindex, version 2.17 [TeX Live 2023] (kpathsea + Thai support). Scanning input file fullrefman.idx...................done (15177 entries accepted, 39 rejected). Sorting entries.....................................................................................................................................................................done (241517 comparisons). Generating output file fullrefman.ind..................done (15167 lines written, 51 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 149--157 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 337--340 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . 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Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] [26] [27] [28] [29] [30] Underfull \vbox (badness 3803) has occurred while \output is active [31] [32] [33] [34] [35] [36] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the [120] Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [121] [122] Underfull \vbox (badness 10000) has occurred while \output is active [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [132] [133] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [134] [135] [136] [137] [138] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 2744) in paragraph at lines 12524--12526 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] Underfull \hbox (badness 2253) in paragraph at lines 14728--14730 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [226] Underfull \hbox (badness 1490) in paragraph at lines 14763--14766 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [227] Underfull \hbox (badness 1565) in paragraph at lines 14845--14849 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [228] Underfull \hbox (badness 4927) in paragraph at lines 14896--14898 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [229] [230] Underfull \hbox (badness 1466) in paragraph at lines 15047--15050 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [231] [232] Underfull \hbox (badness 10000) in paragraph at lines 15178--15182 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15189--15192 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [233] [234] [235] [236] [237] Underfull \hbox (badness 3965) in paragraph at lines 15484--15488 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 5260) in paragraph at lines 15986--15986 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [245] [246] [247] [248] [249] Underfull \hbox (badness 4429) in paragraph at lines 16276--16279 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 16383--16385 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [252] Underfull \hbox (badness 2035) in paragraph at lines 16456--16460 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] [261] [262] Underfull \hbox (badness 2452) in paragraph at lines 17079--17083 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17079--17083 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [263] [264] Underfull \hbox (badness 1092) in paragraph at lines 17253--17258 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [265] [266] [267] [268] Underfull \hbox (badness 6741) in paragraph at lines 17506--17510 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] Underfull \vbox (badness 10000) has occurred while \output is active [280] Underfull \vbox (badness 10000) has occurred while \output is active [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1769) in paragraph at lines 18979--18982 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19288--19290 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19294--19303 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [296] [297] [298] [299] [300] [301] [302] [303] [304] Underfull \hbox (badness 1442) in paragraph at lines 19902--19904 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [305] [306] Underfull \hbox (badness 2452) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 19998--20024 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 1248) in paragraph at lines 20395--20398 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20658--20660 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] Underfull \hbox (badness 2469) in paragraph at lines 21816--21821 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [336] [337] Underfull \hbox (badness 1675) in paragraph at lines 21903--21912 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21913--21926 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21961--21964 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21961--21964 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [338] [339] Underfull \hbox (badness 1014) in paragraph at lines 22095--22100 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] Underfull \hbox (badness 1264) in paragraph at lines 22942--22950 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [353] Underfull \hbox (badness 4441) in paragraph at lines 22977--22980 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 5231) in paragraph at lines 23795--23797 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383] Underfull \hbox (badness 6380) in paragraph at lines 24905--24911 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24905--24911 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2790) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25418--25421 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [392] [393] [394] [395] [396] Underfull \hbox (badness 1194) in paragraph at lines 25746--25749 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [397] [398] [399] Underfull \hbox (badness 2368) in paragraph at lines 25953--25959 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 10000) in paragraph at lines 26343--26346 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 10000) in paragraph at lines 26971--26973 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [416] [417] [418] [419] [420] [421] [422] Underfull \hbox (badness 2443) in paragraph at lines 27462--27470 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [423] [424] [425] [426] [427] [428] [429] Underfull \hbox (badness 1881) in paragraph at lines 27892--27895 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 27917--27919 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [430] [431] Underfull \hbox (badness 2142) in paragraph at lines 28058--28062 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 28115--28120 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [432] [433] [434] [435] Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28411--28417 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28424--28427 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28450--28452 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28496--28501 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly [436] Underfull \hbox (badness 2529) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28502--28513 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28514--28517 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [437] [438] [439] [440] [441] Underfull \vbox (badness 10000) has occurred while \output is active [442] Underfull \hbox (badness 10000) in paragraph at lines 28932--28936 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [443] [444] Underfull \hbox (badness 10000) in paragraph at lines 29079--29082 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [445] Underfull \hbox (badness 7925) in paragraph at lines 29160--29164 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29160--29164 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29165--29174 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 2726) in paragraph at lines 30179--30182 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] Underfull \vbox (badness 10000) has occurred while \output is active [481] [482] [483] [484] [485] [486] [487] [488] [489] Underfull \hbox (badness 1533) in paragraph at lines 31976--31979 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [490] [491] [492] Underfull \hbox (badness 1163) in paragraph at lines 32147--32158 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [493] [494] [495] [496] [497] [498] [499] Underfull \vbox (badness 10000) has occurred while \output is active [500] [501] Underfull \hbox (badness 6300) in paragraph at lines 32693--32695 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] Underfull \hbox (badness 10000) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33816--33820 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33837--33839 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33840--33844 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [519] [520] Underfull \vbox (badness 10000) has occurred while \output is active [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1655) in paragraph at lines 34442--34444 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] Underfull \hbox (badness 2261) in paragraph at lines 35645--35650 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] Underfull \hbox (badness 3668) in paragraph at lines 36680--36684 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [564] Underfull \hbox (badness 10000) in paragraph at lines 36771--36782 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] Underfull \hbox (badness 10000) in paragraph at lines 38403--38405 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [590] [591] [592] [593] [594] [595] [596] Underfull \hbox (badness 2913) in paragraph at lines 38821--38825 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [597] [598] [599] Underfull \hbox (badness 1072) in paragraph at lines 39067--39071 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by [600] Underfull \hbox (badness 10000) in paragraph at lines 39072--39076 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39112--39118 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39127--39134 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39127--39134 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [601] [602] [603] [604] Underfull \hbox (badness 2644) in paragraph at lines 39362--39366 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] Underfull \hbox (badness 1158) in paragraph at lines 40890--40892 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] Underfull \hbox (badness 1137) in paragraph at lines 41490--41496 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41508--41513 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [639] [640] Underfull \hbox (badness 1616) in paragraph at lines 41628--41633 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [641] [642] [643] [644] Underfull \vbox (badness 3803) has occurred while \output is active [645] [646] [647] [648] [649] Underfull \hbox (badness 1472) in paragraph at lines 42174--42177 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [650] [651] [652] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42386. [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] Underfull \hbox (badness 10000) in paragraph at lines 43125--43129 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [665] [666] [667] [668] [669] Underfull \hbox (badness 10000) in paragraph at lines 43484--43487 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [670] [671] [672] Underfull \hbox (badness 10000) in paragraph at lines 43668--43672 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 10000) in paragraph at lines 44316--44319 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [683] [684] [685] [686] [687] [688] Underfull \vbox (badness 10000) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] Underfull \hbox (badness 1990) in paragraph at lines 45232--45240 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45232--45240 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] Underfull \hbox (badness 1014) in paragraph at lines 46669--46672 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [719] [720] Underfull \hbox (badness 2401) in paragraph at lines 46802--46806 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [721] [722] Underfull \hbox (badness 3492) in paragraph at lines 46928--46930 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [723] [724] Underfull \hbox (badness 2111) in paragraph at lines 47014--47019 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [725] [726] [727] Underfull \hbox (badness 4001) in paragraph at lines 47262--47264 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [728] [729] [730] [731] [732] [733] [734] Underfull \hbox (badness 5417) in paragraph at lines 47663--47667 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [735] Underfull \hbox (badness 10000) in paragraph at lines 47724--47728 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [736]) (./compiler-pkg.tex Chapter 2. [737] [738] [739] [740]) (./datasets-pkg.tex Chapter 3. [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] [798] [799] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823]) (./grDevices-pkg.tex [824] Chapter 4. [825] [826] [827] [828] [829] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [839] [840] [841] [842] [843] [844] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [845] [846] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [847] [848] [849] [850] [851] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [852] [853] [854] [855] [856] [857] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [858] [859] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [860] [861] [862] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [863] [864] [865] [866] [867] [868] [869] [870] [871] [872] [873] [874] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] Underfull \vbox (badness 3803) has occurred while \output is active [887] [888] [889] [890] Underfull \vbox (badness 10000) has occurred while \output is active [891] [892] [893] [894] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [895] [896] [897] [898] [899] [900] [901] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [902] [903] [904] [905] Underfull \vbox (badness 3803) has occurred while \output is active [906] [907] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [908] [909] [910] [911] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [912] [913] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [914] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [915] [916] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [917] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [918] [919] [920] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [921] [922] [923] [924] [925] [926] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [927] [928] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [929] [930] [931] [932] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [943] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [944] [945] [946] [947] [948] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [949] [950] [951] [952] [953] [954]) (./graphics-pkg.tex Chapter 5. [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] Underfull \vbox (badness 3803) has occurred while \output is active [966] [967] [968] [969] [970] [971] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [972] [973] [974] [975] [976] [977] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [995] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] Underfull \vbox (badness 10000) has occurred while \output is active [1019] Underfull \vbox (badness 10000) has occurred while \output is active [1020] [1021] [1022] [1023] [1024] [1025] Underfull \vbox (badness 3803) has occurred while \output is active [1026] [1027] [1028] [1029] [1030] [1031] [1032] Underfull \hbox (badness 3229) in paragraph at lines 4728--4733 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1033] [1034] [1035] [1036] [1037] Underfull \hbox (badness 1107) in paragraph at lines 5228--5234 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [1038] [1039] Underfull \hbox (badness 10000) in paragraph at lines 5357--5360 [1040 ] Underfull \hbox (badness 10000) in paragraph at lines 5418--5420 [1041 ] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6092 \aliasA{plot}{plot.default}{plot} [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6992--6993 [][] [1066 ] [1067] Underfull \vbox (badness 3803) has occurred while \output is active [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 4954) in paragraph at lines 9104--9106 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9106--9108 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1101] [1102] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9186 \HeaderA{units}{Graphical Units}{units} [1103] [1104] [1105] [1106]) (./grid-pkg.tex Chapter 6. [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \vbox (badness 10000) has occurred while \output is active [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] [1185] [1186] [1187] [1188] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1195] [1196] [1197] [1198] [1199] [1200] [1201] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1202] [1203] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235]) (./methods-pkg.tex [1236] Chapter 7. [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] Underfull \vbox (badness 10000) has occurred while \output is active [1245] Underfull \vbox (badness 10000) has occurred while \output is active [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1265] [1266] [1267] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1268] [1269] [1270] [1271] [1272] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1273] [1274] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in [1275] Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1276] [1277] [1278] [1279] [1280] [1281] [1282] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1283] [1284] [1285] [1286] [1287] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1288] [1289] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1290] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \vbox (badness 10000) has occurred while \output is active [1311] [1312] [1313] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1314] [1315] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1316] [1317] [1318] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1328] [1329] [1330] [1331] Underfull \vbox (badness 10000) has occurred while \output is active [1332] [1333] [1334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1335] [1336] [1337] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1338] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1339] [1340] [1341] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] Underfull \vbox (badness 10000) has occurred while \output is active [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1383] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1384] [1385] [1386] [1387]) (./parallel-pkg.tex [1388] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1389] [1390] [1391] [1392] [1393] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1411] [1412]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428]) (./stats-pkg.tex Chapter 10. [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1485] [1486] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1515] [1516] [1517] [1518] [1519] [1520] [1521] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1535] [1536] [1537] [1538] [1539] [1540] Underfull \vbox (badness 10000) has occurred while \output is active [1541] [1542] [1543] Underfull \vbox (badness 10000) has occurred while \output is active [1544] [1545] [1546] [1547] [1548] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1549] [1550] [1551] [1552] [1553] [1554] Underfull \vbox (badness 3803) has occurred while \output is active [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Underfull \vbox (badness 3803) has occurred while \output is active [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1577] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1604] Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1605] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1606] [1607] [1608] [1609] [1610] [1611] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1620] [1621] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1622] Underfull \vbox (badness 3803) has occurred while \output is active [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1637] [1638] [1639] [1640] [1641] [1642] [1643] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1644] [1645] [1646] [1647] [1648] [1649] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1660] [1661] [1662] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1716] [1717] Underfull \vbox (badness 10000) has occurred while \output is active [1718] Underfull \vbox (badness 10000) has occurred while \output is active [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1733] [1734] [1735] Underfull \vbox (badness 10000) has occurred while \output is active [1736] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1737] [1738] [1739] [1740] [1741] [1742] [1743] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1760] [1761] [1762] [1763] [1764] [1765] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1766] [1767] [1768] [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1817] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1818] [1819] [1820] [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] [1829] [1830] [1831] [1832] [1833] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1834] Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1844] [1845] [1846] [1847] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] Underfull \vbox (badness 10000) has occurred while \output is active [1873] [1874] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1879] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1880] [1881] [1882] [1883] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1884] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1885] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1886] [1887] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1888] [1889] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1908] [1909] [1910] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1911] [1912] [1913] [1914] [1915] [1916] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1917] [1918] [1919] [1920] [1921] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1943] [1944] [1945] Underfull \vbox (badness 10000) has occurred while \output is active [1946] [1947] [1948] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] [1957] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1958] [1959] [1960] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1961] [1962] [1963] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1964] [1965] [1966] [1967] [1968]) (./stats4-pkg.tex Chapter 11. [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] [1974] [1975] [1976] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1977] [1978] [1979]) (./tcltk-pkg.tex [1980] Chapter 12. [1981] [1982] [1983] [1984] [1985] [1986] [1987] Underfull \vbox (badness 10000) has occurred while \output is active [1988] Underfull \vbox (badness 10000) has occurred while \output is active [1989] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1990] [1991] [1992] [1993] [1994] Underfull \vbox (badness 10000) has occurred while \output is active [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002]) (./tools-pkg.tex Chapter 13. [2003] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [2004] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [2005] [2006] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [2007] [2008] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [2009] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] [2021] [2022] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2023] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2024] [2025] [2026] [2027] [2028] [2029] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [2030] [2031] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2032] [2033] [2034] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [2043] [2044] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2071] [2072] [2073] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2074] [2075] [2076] [2077] [2078] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [2079] [2080] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2081] [2082] [2083] [2084] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [2085] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2086] [2087] [2088] [2089]) (./utils-pkg.tex [2090] Chapter 14. [2091] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2102] [2103] [2104] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2105] [2106] [2107] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2128] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2129] [2130] [2131] Underfull \vbox (badness 3803) has occurred while \output is active [2132] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151] [2152] [2153] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2154] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2155] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2156] [2157] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5109 ...mat Unordered and Ordered Lists}{format} [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] Underfull \hbox (badness 1622) in paragraph at lines 5632--5636 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2179] [2180] [2181] [2182] [2183] [2184] Underfull \hbox (badness 1448) in paragraph at lines 6011--6016 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] Underfull \hbox (badness 1371) in paragraph at lines 6559--6561 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2193] Underfull \hbox (badness 1502) in paragraph at lines 6648--6654 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6648--6654 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2194] [2195] [2196] Underfull \hbox (badness 10000) in paragraph at lines 6825--6834 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6825--6834 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2197] Underfull \hbox (badness 2150) in paragraph at lines 6887--6890 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2198] [2199] Underfull \hbox (badness 3118) in paragraph at lines 7026--7028 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2200] [2201] [2202] Underfull \hbox (badness 1325) in paragraph at lines 7205--7209 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2203] Underfull \hbox (badness 1424) in paragraph at lines 7297--7300 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2204] Underfull \hbox (badness 3219) in paragraph at lines 7369--7376 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7369--7376 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7369--7376 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7377--7380 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2205] Underfull \hbox (badness 1024) in paragraph at lines 7506--7509 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2206] Underfull \hbox (badness 10000) in paragraph at lines 7539--7544 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2207] Underfull \hbox (badness 5133) in paragraph at lines 7598--7602 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 10000) in paragraph at lines 8262--8264 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] Underfull \hbox (badness 2310) in paragraph at lines 9049--9054 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] Underfull \hbox (badness 1248) in paragraph at lines 9615--9619 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2241] Underfull \hbox (badness 1789) in paragraph at lines 9693--9695 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2242] [2243] [2244] [2245] Underfull \hbox (badness 2600) in paragraph at lines 9917--9920 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254] Underfull \hbox (badness 1097) in paragraph at lines 10554--10557 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2255] [2256] Underfull \hbox (badness 3000) in paragraph at lines 10690--10695 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] Underfull \hbox (badness 2134) in paragraph at lines 11285--11290 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2266] Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11341--11346 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2267] [2268] [2269] [2270] [2271] [2272] [2273] [2274] Underfull \hbox (badness 1824) in paragraph at lines 11839--11843 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2275] [2276] [2277] [2278] [2279] [2280] [2281] Underfull \hbox (badness 4060) in paragraph at lines 12284--12287 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12307--12307 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2282] [2283] [2284] [2285] Underfull \hbox (badness 2150) in paragraph at lines 12562--12564 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2286] [2287] [2288] [2289] Underfull \hbox (badness 10000) in paragraph at lines 12782--12786 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12815--12821 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2290] Underfull \hbox (badness 2762) in paragraph at lines 12830--12836 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2291] [2292] Underfull \hbox (badness 1009) in paragraph at lines 13005--13017 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If Underfull \hbox (badness 4779) in paragraph at lines 13045--13047 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and [2293] Underfull \hbox (badness 1077) in paragraph at lines 13075--13082 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2294] [2295] [2296] [2297] [2298] [2299] Underfull \hbox (badness 3780) in paragraph at lines 13500--13506 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via [2300] Underfull \hbox (badness 2635) in paragraph at lines 13518--13521 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2301] [2302] [2303] Underfull \hbox (badness 2302) in paragraph at lines 13728--13730 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2304] [2305] [2306] [2307] [2308] Underfull \hbox (badness 4441) in paragraph at lines 14027--14032 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14036--14039 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2309] [2310] [2311] [2312] [2313] [2314] [2315] Underfull \hbox (badness 2932) in paragraph at lines 14467--14474 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14467--14474 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2316] [2317] [2318] Underfull \hbox (badness 1460) in paragraph at lines 14631--14639 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used [2319] Underfull \hbox (badness 6510) in paragraph at lines 14777--14781 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14784--14787 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14784--14787 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] Underfull \hbox (badness 10000) in paragraph at lines 15457--15462 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15457--15462 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15463--15465 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. 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'/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' building package 'compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/compiler' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tools' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' building package 'utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/utils' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[9]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grDevices' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' building package 'graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/graphics' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' building package 'stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' building package 'datasets' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/datasets' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' building package 'methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/methods' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' building package 'grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/grid' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' building package 'splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/splines' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' building package 'stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/stats4' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk/src' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/tcltk' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' building package 'parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[6]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[7]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[6]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel/src' make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/parallel' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library/base' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... processing 'reshape.Rnw' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' touch make-indep-stamp fakeroot debian/rules binary *** check *** touch check-stamp *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /build/reproducible-path/r-base-4.4.0/debian/r-base-core /usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.4.0/debian/r-base-core install make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/m4' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tools' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc' installing doc ... mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/html' installing doc/html ... mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/html' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' installing doc/manual ... mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/etc' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/etc' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/share' installing share ... mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/R mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/java mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/make mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/share' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/scripts' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/scripts' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include/R_ext' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/blas' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tre' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/tzone' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/tzone' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/xdr' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra/intl' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/extra' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/appl' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/main' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/main' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/internet' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/lapack' make[4]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[4]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules/X11' make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/modules' make[3]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/library' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/library' make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/tests' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' (cd src/unix; \ rm -vf Rscript /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0=. -fstack-protector-strong -fstack-clash-protection -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/build/reproducible-path/r-base-4.4.0/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/r-base-4.4.0/src/unix=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -D_REENTRANT -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/unix' #ls -ltr /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/Rscript' #ls -ltr /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/ #strings /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/build/reproducible-path/r-base-4.4.0/debian/r-base-core install ) make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/include' /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0/src/nmath/standalone' chmod a+x /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/COPYING removed '/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/COPYING' (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc/COPYING removed '/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc/COPYING' (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr \ rdocdir=/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' installing R manuals in PDF format ... make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' make prefix=/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr \ infodir=/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/build/reproducible-path/r-base-4.4.0' make[2]: Entering directory '/build/reproducible-path/r-base-4.4.0/doc/manual' mkdir -p -- /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info" installing R info pages ... updating '/build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir' ... you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually you need to adjust /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/build/reproducible-path/r-base-4.4.0/doc/manual' make[1]: Leaving directory '/build/reproducible-path/r-base-4.4.0' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html gunzip -9v /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/*.gz /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.5% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-FAQ.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.2% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-admin.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-data.info.gz: 70.9% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-data.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.8% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-1 /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 67.9% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-2 /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 76.8% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info-3 /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.6% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-exts.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.4% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-intro.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.7% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-ints.info /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-lang.info.gz: 72.0% -- replaced with /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /build/reproducible-path/r-base-4.4.0/debian/r-doc-info/usr/share/info/dir \ /build/reproducible-path/r-base-4.4.0/debian/r-doc-info/usr/share/info/dir.old removed '/build/reproducible-path/r-base-4.4.0/debian/r-doc-info/usr/share/info/dir' touch install-indep-stamp dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /build/reproducible-path/r-base-4.4.0/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 856 -rw-r--r-- 1 root root 550102 Apr 27 02:26 libRmath.a -rwxr-xr-x 1 root root 315768 Apr 27 02:26 libRmath.so drwxr-xr-x 2 root root 4096 Apr 27 02:26 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /build/reproducible-path/r-base-4.4.0/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /build/reproducible-path/r-base-4.4.0/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /build/reproducible-path/r-base-4.4.0/debian/r-base-core/etc/R (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/etc; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/Rlogo.svg \ debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installexamples -pr-mathlib src/nmath/standalone/test.c (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /build/reproducible-path/r-base-4.4.0/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /build/reproducible-path/r-base-4.4.0/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip -a dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /build/reproducible-path/r-base-4.4.0/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libtirpc3t64 from: /lib/arm-linux-gnueabihf/libtirpc.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libtirpc3t64 to: /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 from: /lib/arm-linux-gnueabihf/libreadline.so.8 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libreadline8t64 to: /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged *** Getting graphics engine version from 'GraphicsEngine.h' header echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.4.0-2_armhf.deb'. dpkg-deb: building package 'r-base-core' in '../r-base-core_4.4.0-2_armhf.deb'. dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_4.4.0-2_armhf.deb'. dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_4.4.0-2_armhf.deb'. *** binary-indep *** dh_testdir -i dh_testroot -i dh_link -i dh_installdocs -i dh_installdocs -v -pr-doc-html install -p -m0644 debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright install -m0755 -d debian/r-doc-html/usr/share/doc-base/ install -p -m0644 debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-doc-html.r-intro install -p -m0644 debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-doc-html.r-ints install -p -m0644 debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-doc-html.r-extensions install -p -m0644 debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-doc-html.r-faq install -p -m0644 debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-doc-html.r-admin install -p -m0644 debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-doc-html.r-language install -p -m0644 debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-doc-html.r-data dh_installchangelogs -i dh_installdirs -pr-base-dev usr/share/R/debian install -p -m 0755 debian/r-cran.mk \ /build/reproducible-path/r-base-4.4.0/debian/r-base-dev/usr/share/R/debian dh_compress -i dh_fixperms -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'r-doc-pdf' in '../r-doc-pdf_4.4.0-2_all.deb'. dpkg-deb: building package 'r-base' in '../r-base_4.4.0-2_all.deb'. dpkg-deb: building package 'r-recommended' in '../r-recommended_4.4.0-2_all.deb'. dpkg-deb: building package 'r-base-dev' in '../r-base-dev_4.4.0-2_all.deb'. dpkg-deb: building package 'r-base-html' in '../r-base-html_4.4.0-2_all.deb'. dpkg-deb: building package 'r-doc-html' in '../r-doc-html_4.4.0-2_all.deb'. dpkg-deb: building package 'r-doc-info' in '../r-doc-info_4.4.0-2_all.deb'. dpkg-genbuildinfo --build=binary -O../r-base_4.4.0-2_armhf.buildinfo dpkg-genchanges --build=binary -O../r-base_4.4.0-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32130 and its subdirectories I: Current time: Sat Apr 27 02:27:35 -12 2024 I: pbuilder-time-stamp: 1714228055 Sat Apr 27 14:29:31 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sat Apr 27 14:29:31 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sat Apr 27 15:14:47 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sat Apr 27 15:14:50 UTC 2024 I: r-base_4.4.0-2_armhf.changes: Format: 1.8 Date: Fri, 26 Apr 2024 08:46:14 -0500 Source: r-base Binary: r-base r-base-core r-base-core-dbgsym r-base-dev r-base-html r-doc-html r-doc-info r-doc-pdf r-mathlib r-mathlib-dbgsym r-recommended Architecture: armhf all Version: 4.4.0-2 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel Changed-By: Dirk Eddelbuettel Description: r-base - GNU R statistical computation and graphics system r-base-core - GNU R core of statistical computation and graphics system r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Closes: 1069842 Changes: r-base (4.4.0-2) unstable; urgency=medium . * debian/control: Add libdeflate-dev to Depends of r-base-dev (Closes: #1069842) * debian/control: Change pkg-config to pkgconf in Depends of r-base-dev [lintian] Checksums-Sha1: e2f109d8efec0c2ac2d241f59dfc35a18e7969fb 2138392 r-base-core-dbgsym_4.4.0-2_armhf.deb d6b8829b5b5185f756e6464d8517a01e343f51a6 28041284 r-base-core_4.4.0-2_armhf.deb 726e9064ee9596a707d2173d3335c831948daf92 4512 r-base-dev_4.4.0-2_all.deb 13301921c8eefcf5583b5658f1d1810cc282085b 62600 r-base-html_4.4.0-2_all.deb fdeb14987b56c1404eb48e77364010bdfc6e5a62 14320 r-base_4.4.0-2_all.deb 884e2243310010e362193dc0b8ce3f8f277e8d26 17116 r-base_4.4.0-2_armhf.buildinfo 0a2f6ffbcc1121da3a931c32227b8a3dac1040d4 580008 r-doc-html_4.4.0-2_all.deb 5cc388dafa0e70c965aca0401dd17637282fd032 637828 r-doc-info_4.4.0-2_all.deb 2efc8d5a1fb76abf70c75e02f20d31e7d3ec7cb4 9984268 r-doc-pdf_4.4.0-2_all.deb 167c18a2c97beb935e1abfe8a279d83a2438a54b 66012 r-mathlib-dbgsym_4.4.0-2_armhf.deb 5465911fcc2c5c6e4e236fbd4e84dd771accc3c0 2534472 r-mathlib_4.4.0-2_armhf.deb f3823522811cba72f4ba991fdc2e7cb1fa0c0f66 2768 r-recommended_4.4.0-2_all.deb Checksums-Sha256: f98a6e72ffa90957e1504ef224e5127f9a21bb3681f0b0b793213f599a1e2c2e 2138392 r-base-core-dbgsym_4.4.0-2_armhf.deb d65fcb8a656fd29a70e4a39fa310feec315bdde860e3aa2903b3f371784dd61e 28041284 r-base-core_4.4.0-2_armhf.deb 9a945c539ec69fa4af966dbb191bd019af8ece8d0f77f5fb72b65b6ac4c2617e 4512 r-base-dev_4.4.0-2_all.deb e95ee3d09f21ca69635e5062075ad8d37bd375c78050fafb62e437070e98e11f 62600 r-base-html_4.4.0-2_all.deb b5d6a8ec34cd0a3926fc6836195a86c70587bcf3d6135464f6a39fb8594b5218 14320 r-base_4.4.0-2_all.deb 77fe1e2d30809d80943e9518c2a686d47aded0d257c2df5139ec18c4742d6f19 17116 r-base_4.4.0-2_armhf.buildinfo 5348372ff045f8adbde30ec1fa32de646b2eb5de074e5953ea61aa922c1293e2 580008 r-doc-html_4.4.0-2_all.deb cab16ff23fffbaa954ec4b65996b0becfe2a2f7f0df988b112a2e2aa686e70f6 637828 r-doc-info_4.4.0-2_all.deb fdd0ccbfe6c1b6e5f63dbeb38b27a1a49c9674c937d6fca69c5fbd69b3162c2e 9984268 r-doc-pdf_4.4.0-2_all.deb b75e73a83e49fc27fbdb99a8976076651676e2abbfc570807f4d887b07362480 66012 r-mathlib-dbgsym_4.4.0-2_armhf.deb d7a8b785c1280366e25a119ee8baece63e47d34969cb8e9b1d37b8dbe4aafdd3 2534472 r-mathlib_4.4.0-2_armhf.deb f62aa06283ea4818248ccc6a28aa1d2a62f04470e64e313dd96090fb86d78f09 2768 r-recommended_4.4.0-2_all.deb Files: 6cbdecf5fb8b1ada6185c5a3f823d075 2138392 debug optional r-base-core-dbgsym_4.4.0-2_armhf.deb 9c56296ce2740d11405373176ad6ccbc 28041284 gnu-r optional r-base-core_4.4.0-2_armhf.deb b3388076c13383cd6677c318585de2e5 4512 gnu-r optional r-base-dev_4.4.0-2_all.deb 32d2a9ad859bc423f3fba92c1c7e8257 62600 doc optional r-base-html_4.4.0-2_all.deb 5081e4bbde103b938dfe66946840d48f 14320 gnu-r optional r-base_4.4.0-2_all.deb 9faea7d67e3aabf25562408195934700 17116 gnu-r optional r-base_4.4.0-2_armhf.buildinfo 79a826d5f92b1b2f510c382bac34e194 580008 doc optional r-doc-html_4.4.0-2_all.deb 07966788ba5ace1beaff03d9bae93e41 637828 doc optional r-doc-info_4.4.0-2_all.deb e8fbfd156fa20aca1bd782bf971ad3ec 9984268 doc optional r-doc-pdf_4.4.0-2_all.deb faac20d05835fa040c7027bba8907857 66012 debug optional r-mathlib-dbgsym_4.4.0-2_armhf.deb 0f4bbc11816c3c2ae495cf36a544e3b6 2534472 gnu-r optional r-mathlib_4.4.0-2_armhf.deb e1c6ba71dc598d77db131e0aa600ba35 2768 gnu-r optional r-recommended_4.4.0-2_all.deb Sat Apr 27 15:14:53 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_25-4794.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/r-base_4.4.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/r-base_4.4.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/r-base_4.4.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/b1/r-base_4.4.0-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.4YzPRw3O/b2/r-base_4.4.0-2_armhf.changes ## close_archive (total time: 0.001s) 0.000s 30 calls diffoscope.comparators.gzip.GzipContainer 0.000s 10 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 72.526s) 22.700s 45 calls diff 22.279s 12 calls xz 14.261s 33 calls pdftotext 8.196s 10 calls xxd 4.546s 187 calls Rscript 0.221s 30 calls gzip 0.142s 10 calls cmp 0.142s 10 calls cmp (external) 0.037s 99 calls cmp (internal) ## compare_files (cumulative) (total time: 3094.352s) 623.897s 1 call abc.DotChangesFile 623.394s 2 calls abc.DebFile 621.516s 4 calls abc.XzFile 598.625s 2 calls abc.DebDataTarFile 527.483s 3 calls abc.PdfFile 37.117s 15 calls abc.GzipFile 36.520s 15 calls abc.RdsFile 22.519s 2 calls abc.RdbFile 2.627s 15 calls abc.TextFile 0.469s 2 calls abc.TarFile 0.186s 2 calls abc.Md5sumsFile ## container_extract (total time: 26.914s) 22.280s 12 calls diffoscope.comparators.xz.XzContainer 2.890s 2482 calls diffoscope.comparators.deb.DebTarContainer 1.438s 16 calls diffoscope.comparators.deb.DebContainer 0.224s 30 calls diffoscope.comparators.gzip.GzipContainer 0.082s 24 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.375s) 1.375s 219 calls linediff ## has_same_content_as (total time: 0.235s) 0.050s 11 calls abc.DebFile 0.044s 3 calls abc.PdfFile 0.032s 15 calls abc.RdsFile 0.030s 2 calls abc.DebDataTarFile 0.026s 2 calls abc.RdbFile 0.017s 4 calls abc.Md5sumsFile 0.015s 30 calls abc.TextFile 0.013s 21 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.007s 15 calls abc.GzipFile 0.001s 4 calls abc.XzFile 0.001s 2 calls abc.TarFile 0.000s 1 call abc.DotChangesFile ## main (total time: 631.654s) 631.628s 2 calls outputs 0.027s 1 call cleanup ## open_archive (total time: 0.009s) 0.008s 30 calls diffoscope.comparators.gzip.GzipContainer 0.000s 12 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.tar.TarContainer 0.000s 4 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 3.320s) 3.222s 1 call html 0.069s 1 call text 0.029s 1 call json ## recognizes (total time: 3.382s) 1.750s 4066 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.827s 12 calls diffoscope.comparators.binary.FilesystemFile 0.462s 2200 calls diffoscope.comparators.utils.archive.ArchiveMember 0.343s 594 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 2.466s) 2.466s 110 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 10min 34.670s CPU time consumed: 6min 15.408s Sat Apr 27 15:25:29 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Apr 27 15:25:29 UTC 2024 E: r-base failed to build reproducibly in unstable on armhf. Sat Apr 27 15:25:34 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Apr 27 15:25:34 UTC 2024 I: Submitting 20K b1/r-base_4.4.0-2_armhf.buildinfo.asc Sat Apr 27 15:25:37 UTC 2024 I: Submitting 20K b2/r-base_4.4.0-2_armhf.buildinfo.asc Sat Apr 27 15:25:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 27 15:25:38 UTC 2024 I: Done submitting .buildinfo files. Sat Apr 27 15:25:38 UTC 2024 I: Removing signed r-base_4.4.0-2_armhf.buildinfo.asc files: removed './b1/r-base_4.4.0-2_armhf.buildinfo.asc' removed './b2/r-base_4.4.0-2_armhf.buildinfo.asc'