Fri Apr 19 14:13:39 UTC 2024 I: starting to build mapdamage/unstable/i386 on jenkins on '2024-04-19 14:13' Fri Apr 19 14:13:39 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/17007/console.log Fri Apr 19 14:13:39 UTC 2024 I: Downloading source for unstable/mapdamage=2.2.1+dfsg-3 --2024-04-19 14:13:39-- http://deb.debian.org/debian/pool/main/m/mapdamage/mapdamage_2.2.1%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2232 (2.2K) [text/prs.lines.tag] Saving to: ‘mapdamage_2.2.1+dfsg-3.dsc’ 0K .. 100% 192M=0s 2024-04-19 14:13:39 (192 MB/s) - ‘mapdamage_2.2.1+dfsg-3.dsc’ saved [2232/2232] Fri Apr 19 14:13:39 UTC 2024 I: mapdamage_2.2.1+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapdamage Binary: mapdamage Architecture: all Version: 2.2.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ginolhac.github.io/mapDamage/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/mapdamage Vcs-Git: https://salsa.debian.org/med-team/mapdamage.git Testsuite: autopkgtest Testsuite-Triggers: gfortran, r-cran-runit Build-Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam , seqtk , r-base-core , r-cran-gam , r-cran-ggplot2 , r-cran-inline Package-List: mapdamage deb science optional arch=all Checksums-Sha1: 1895eeaca1da0536f148df646406c250912cf085 36220 mapdamage_2.2.1+dfsg.orig.tar.xz 03511859b086c89b05d8ef5ccf8df3f372d185d9 7764 mapdamage_2.2.1+dfsg-3.debian.tar.xz Checksums-Sha256: b54e89c95d452bd8bfbe7bb5515532b60a29adee1c8143179d2e0aba63dc0759 36220 mapdamage_2.2.1+dfsg.orig.tar.xz ab6af46f6328a83165c0358023851bb9e7dfe7c4891debbc21b8bd8de2187c73 7764 mapdamage_2.2.1+dfsg-3.debian.tar.xz Files: 2b901d6c442477879634eece19086d63 36220 mapdamage_2.2.1+dfsg.orig.tar.xz 1acb2557a27106670c3139380505b995 7764 mapdamage_2.2.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/VJERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHEsg/+LL/RvIvRJRBFsq6C2iT41IoPKhUh8pPn O0ipuTcle/O/ky0stwC3TCjjRFcwX+5QkyZvV+buB/ZcZfrai4q3dVFbsG8dhjHP hzQ/U6FOo6/YlQzmKmW+oio+vSzqaJoT7rG5xqgDS+fLvrQfi1WfvsP7ubXC1muv 80cnyE3SzYG6YiDm6h586RTkmyz0sEA/KRC8l9WGCvOtMuLl5yVBQMk/r5FICdn2 1QHEzuY4thvtuMhyKio8Th1aCQWqH9vNr1R3Qo7fSMp9lawWgbpG8R3Z84NhZdej lsTKUbreQpiXLGkT7YL9cvbihuDWeYvtciiBonbOIZ1vgh1IuAYSieGTdJayf8xQ MhYkGrHEbii7Qe85fHsvsKxEVmIvZvw2ZDfBLcoBolVW9ohUvjxHnWyqS7WU6Sz+ c6EQuhoIQfApu7QhYXPgDwPAqw5N+gMc7Bm0j2RwhU3ev2czOi42wYSbtXRuHi0S udEvlmaO7fCTVrzpP4NMpzo8PjiJ+D+yXMeBrn5wSTWBOd1ylndk71CoHHGW+2Qd yvEfnqlprMMR2fARevrhhFI8dFRURPgXQ0x+SQc1PEKtotiLpEx/xr9Pf40hbNou GDzFwMYIhn6Cysw0Ei6rDW+mLaB7ikzXcZj+T+FIcU+OJaIo0MRVu8LblnNejlcO 1eP6dRhqB4Y= =PfS2 -----END PGP SIGNATURE----- Fri Apr 19 14:13:39 UTC 2024 I: Checking whether the package is not for us Fri Apr 19 14:13:39 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Apr 19 14:13:39 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Apr 19 14:14:43 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 22 08:36:41 -12 2025 I: pbuilder-time-stamp: 1747946201 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mapdamage_2.2.1+dfsg-3.dsc] I: copying [./mapdamage_2.2.1+dfsg.orig.tar.xz] I: copying [./mapdamage_2.2.1+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 11:25:05 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.1+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting mapdamage in mapdamage-2.2.1+dfsg dpkg-source: info: unpacking mapdamage_2.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking mapdamage_2.2.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_seqtk.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45203/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5f370257847a4675ace7239d18b80436' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45203' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/pbuilderrc_Brxk --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/b1 --logfile b1/build.log mapdamage_2.2.1+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 21 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/45203/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam, seqtk, r-base-core, r-cran-gam, r-cran-ggplot2, r-cran-inline dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on seqtk; however: Package seqtk is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gam; however: Package r-cran-gam is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-inline; however: Package r-cran-inline is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} r-base-core{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreach{a} r-cran-gam{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-inline{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} seqtk{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx publicsuffix r-base-dev r-cran-bit64 r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-formattable r-cran-fs r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-knitr r-cran-lintr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-stringi r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 159 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-2 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 13 http://deb.debian.org/debian unstable/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 openssl i386 3.2.1-3 [1364 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-6 [96.7 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240401 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.0-3+b1 [588 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2.4 [20.6 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 77 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.16+dfsg-2 [198 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.7.1-2 [467 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.7.1-2 [477 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.78.4-6 [1291 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.19+ds-1.1+b1 [491 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23 [252 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libpango-1.0-0 i386 1.52.1+ds-1 [224 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libpangoft2-1.0-0 i386 1.52.1+ds-1 [51.1 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libpangocairo-1.0-0 i386 1.52.1+ds-1 [36.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 110 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.3.2-0.4+b1 [107 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.3.2-0.4+b1 [314 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.2 [10.9 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.2 [90.1 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libxt6t64 i386 1:1.2.1-1.2 [193 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-pysam i386 0.22.0+ds-1+b2 [4843 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 zip i386 3.0-13 [236 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 unzip i386 6.0-28 [166 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 r-base-core i386 4.3.3-3+b1 [26.9 MB] Get: 126 http://deb.debian.org/debian unstable/main i386 r-cran-cli i386 3.6.2-1 [1325 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 r-cran-colorspace i386 2.1-0+dfsg-1 [1695 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 r-cran-fansi i386 1.0.5-1 [625 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 r-cran-farver i386 2.1.1-2 [1412 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 r-cran-iterators all 1.0.14-1 [337 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 r-cran-foreach all 1.5.2-1 [122 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 r-cran-gam i386 1.22-3-1 [386 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 r-cran-glue i386 1.7.0-1 [157 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 r-cran-rlang i386 1.1.3-1 [1683 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 r-cran-gtable all 0.3.4+dfsg-1 [221 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 r-cran-isoband i386 0.2.7-1 [1617 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 r-cran-mass i386 7.3-60.0.1-1 [1119 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 r-cran-lattice i386 0.22-6-1 [1393 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 r-cran-nlme i386 3.1.164-1 [2283 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 r-cran-matrix i386 1.6-5-1 [3847 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 r-cran-mgcv i386 1.9-1-1 [3256 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 r-cran-munsell all 0.5.0-2 [236 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 r-cran-scales all 1.3.0-1 [677 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 r-cran-utf8 i386 1.2.4-1 [135 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 r-cran-vctrs i386 0.6.5-1 [1393 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 r-cran-tibble i386 3.2.1+dfsg-2 [421 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 r-cran-inline all 0.3.19-2 [129 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 seqtk i386 1.4-2 [38.2 kB] Fetched 111 MB in 1s (80.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_i386.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:i386 (3.11.9-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19997 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_i386.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-2_all.deb ... Unpacking tzdata (2024a-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../5-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20989 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_i386.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_i386.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-3+b1_i386.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40-6_i386.deb ... Unpacking bsdextrautils (2.40-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../023-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../025-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../026-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../028-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../029-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../030-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. 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Setting up libpango-1.0-0:i386 (1.52.1+ds-1) ... Setting up libcurl3t64-gnutls:i386 (8.7.1-2) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.0-3+b1) ... Setting up libxt6t64:i386 (1:1.2.1-1.2) ... Setting up libhts3t64:i386 (1.19+ds-1.1+b1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.52.1+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.52.1+ds-1) ... Setting up libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libtk8.6:i386 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up r-base-core (4.3.3-3+b1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-lattice (0.22-6-1) ... 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Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-gtable (0.3.4+dfsg-1) ... Setting up r-cran-matrix (1.6-5-1) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up dh-python (6.20240401) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mapdamage-2.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapdamage_2.2.1+dfsg-3_source.changes dpkg-buildpackage: info: source package mapdamage dpkg-buildpackage: info: source version 2.2.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f mapdamage/_version.py rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Length_plot.pdf mapdamage/tests/results/Length_plot.pdf rm -f mapdamage/tests/fake1.fasta.fai mapdamage/tests/results/3pGtoA_freq.txt mapdamage/tests/results/5pCtoT_freq.txt mapdamage/tests/results/Runtime_log.txt mapdamage/tests/results/dnacomp.txt mapdamage/tests/results/lgdistribution.txt mapdamage/tests/results/misincorporation.txt mapdamage/tests/test.rescaled.sam make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' cd mapdamage && \ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/build/reproducible-path/mapdamage-2.2.1+dfsg/bin \ PYTHONPATH=/build/reproducible-path/mapdamage-2.2.1+dfsg/.pybuild/cpython3_3.11/build \ python3 mp_test.py Started with the command: /build/reproducible-path/mapdamage-2.2.1+dfsg/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats Error in (yaxis.at == 2) && (yaxis.at == ylabels.at) : 'length = 2' in coercion to 'logical(1)' Calls: plot.base.composition -> plot.axis 3: (function (e) { traceback(2) quit(status = 1) })() 2: plot.axis(2) 1: plot.base.composition(com, "A", "blue", OPT.AROUND, xlabels = FALSE, ylabels.at = c(2, 4)) additional tests/results/Length_plot.pdf generated Successful run Missing the following R libraries 'Rcpp' and 'RcppGSL' The Bayesian estimation has been disabled Reading from 'tests/test.bam' Writing results to 'tests/results/' Error: plotting with R failed Error: Required table has not been created ('5pCtoT_freq.txt'), bayesian computation cannot be performed .. ---------------------------------------------------------------------- Ran 2 tests in 2.574s OK make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/mapdamage/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mapdamage-2.2.1+dfsg/debian/mapdamage dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_python3 --no-ext-rename make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_fixperms find debian -name checkLibraries.R -exec chmod +x \{\} \; find debian -name runGeneral.R -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.1+dfsg' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'mapdamage' in '../mapdamage_2.2.1+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../mapdamage_2.2.1+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../mapdamage_2.2.1+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45203 and its subdirectories I: Current time: Thu May 22 08:37:42 -12 2025 I: pbuilder-time-stamp: 1747946262 Fri Apr 19 14:14:44 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Apr 19 14:14:44 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Apr 19 14:16:15 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Apr 19 14:16:16 UTC 2024 I: mapdamage_2.2.1+dfsg-3_i386.changes: Format: 1.8 Date: Thu, 24 Nov 2022 12:22:34 +0100 Source: mapdamage Binary: mapdamage Architecture: all Version: 2.2.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mapdamage - tracking and quantifying damage patterns in ancient DNA sequences Changes: mapdamage (2.2.1+dfsg-3) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: fa1ebfdc7c7288e04187630d2064e77810e2e23d 41972 mapdamage_2.2.1+dfsg-3_all.deb 1c7c4e87e8df5b4edf5b293a7428876116a9457f 8853 mapdamage_2.2.1+dfsg-3_i386.buildinfo Checksums-Sha256: 96cb9b4266644772a1290da27d6b86a71d7365b9d06eaa8b804b890c4ebebdd9 41972 mapdamage_2.2.1+dfsg-3_all.deb cd54d1754cada0b4c8fa0152bcb146a1bdaafad42c2fade94cb2bc1cdf6c71ca 8853 mapdamage_2.2.1+dfsg-3_i386.buildinfo Files: 39d3a57efd5b6a64924ccb143a7e7f49 41972 science optional mapdamage_2.2.1+dfsg-3_all.deb 2926b78c0ff500c703e775a50f8e2685 8853 science optional mapdamage_2.2.1+dfsg-3_i386.buildinfo Fri Apr 19 14:16:18 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_4-17007.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/mapdamage_2.2.1+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/mapdamage_2.2.1+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/mapdamage_2.2.1+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/b1/mapdamage_2.2.1+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.daLWNUUm/b2/mapdamage_2.2.1+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.699s) 0.699s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.410s CPU time consumed: 1.169s Fri Apr 19 14:16:20 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 19 14:16:20 UTC 2024 I: mapdamage from unstable built successfully and reproducibly on i386. Fri Apr 19 14:16:22 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Apr 19 14:16:22 UTC 2024 I: Submitting 12K b1/mapdamage_2.2.1+dfsg-3_i386.buildinfo.asc Fri Apr 19 14:16:23 UTC 2024 I: Submitting 12K b2/mapdamage_2.2.1+dfsg-3_i386.buildinfo.asc Fri Apr 19 14:16:24 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 19 14:16:24 UTC 2024 I: Done submitting .buildinfo files. Fri Apr 19 14:16:24 UTC 2024 I: Removing signed mapdamage_2.2.1+dfsg-3_i386.buildinfo.asc files: removed './b1/mapdamage_2.2.1+dfsg-3_i386.buildinfo.asc' removed './b2/mapdamage_2.2.1+dfsg-3_i386.buildinfo.asc'