Wed May 1 01:24:40 UTC 2024 I: starting to build python-cobra/unstable/i386 on jenkins on '2024-05-01 01:24' Wed May 1 01:24:40 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/19054/console.log Wed May 1 01:24:40 UTC 2024 I: Downloading source for unstable/python-cobra=0.29.0-2 --2024-05-01 01:24:40-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3121 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.0-2.dsc’ 0K ... 100% 354M=0s 2024-05-01 01:24:40 (354 MB/s) - ‘python-cobra_0.29.0-2.dsc’ saved [3121/3121] Wed May 1 01:24:40 UTC 2024 I: python-cobra_0.29.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.0-2 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-appdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: f28e39c60745c6b7a2c09aa4d9abd39b82bf2b76 3649668 python-cobra_0.29.0.orig.tar.gz a8382a19d158d8f0a674515d3b3feb3ddec7bce6 8884 python-cobra_0.29.0-2.debian.tar.xz Checksums-Sha256: b334b514f0253dfd1f3e1860b687c76005aae55ed98a213166c401b5780fcbc2 3649668 python-cobra_0.29.0.orig.tar.gz df668f6702f022b4e18f19dd75ae71dfcae3085ad92d0622d7b2fb6f8650766a 8884 python-cobra_0.29.0-2.debian.tar.xz Files: d31eb29abffaa85b8db2a936d21bd42f 3649668 python-cobra_0.29.0.orig.tar.gz ad6a395572324288c993f35f6d3e08b3 8884 python-cobra_0.29.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYt5LwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjQhAAkbv+0Irxmq7mqQNwipVbt2vGdzljQW2O +XoS+My9ULJo4+ugozxo06kfYyBMEGpnKOyCsNOI6SG4yl6iEH3OYTAze64Tt9O8 zglOe2InBdUUAGAGWmN0PY53XKsA5UruqyLS6jtNhTTe3vw4mXKPbZsYZi8+kD6K OeGQxO0sFaexgGGU53IxVGUjXXdIoOxVPJ24zPsy2Rjvt+JhpAa2jiou9mS4PJdt rfrMrr71dzKsrqriSqUQe+trkgI6ARDk/gVOw3w6D4vhk5UuOg7stqpYM9x69ck6 quvZU6o2ppyUlUlVcTf6OnCoa4Vp4qMI/f8j6xnZ9S9CeYURrNw8hyRG+G3jgfC7 aswPn27NM79eHebRC5DD7/7BjAfW2ak8XdLiweOMMJPJm600voIZsnjWgCqggjkO 04z564XTHBbMzhUUcIdZDTrME90F7+haMJTbKKCJ9K0KbYSDOOIce5UNu27frdj5 lNBk0iRQWIg4zV4L16TDA3rYwLZMWG3K8hTjWagj7PwHPMulwEg9XUGUr5a0qlJ7 lLL9IUwf4+FjEBB9AccxxPGS99niUDZ93wyjH+uon4G+afGLqh91NA6hAa+bJZOA SXF2sVAfRszR0kAv7vLXk4vqmOlHV0+aT/N7DllV8jM4f+ERzQ9kL+KzPTEli15T JkhcCF0jWGo= =J9XS -----END PGP SIGNATURE----- Wed May 1 01:24:40 UTC 2024 I: Checking whether the package is not for us Wed May 1 01:24:40 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Wed May 1 01:24:40 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Wed May 1 01:31:41 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 30 13:24:44 -12 2024 I: pbuilder-time-stamp: 1714526684 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cobra_0.29.0-2.dsc] I: copying [./python-cobra_0.29.0.orig.tar.gz] I: copying [./python-cobra_0.29.0-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Apr 28 05:55:08 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.0-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.0 dpkg-source: info: unpacking python-cobra_0.29.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying do-not-seek-for-name.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/57384/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='54308fe245b34a29b5ff0ed7e5aba5e3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='57384' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/pbuilderrc_j6IP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/b1 --logfile b1/build.log python-cobra_0.29.0-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 27 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/57384/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19679 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu2{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libparu0{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-hatch-vcs{a} python3-hatchling{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-iniconfig{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} swig{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 214 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 703 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 13 http://deb.debian.org/debian unstable/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 openssl i386 3.2.1-3 [1364 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-1 [148 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23 [252 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b1 [17.3 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 53 http://deb.debian.org/debian unstable/main i386 cython3 i386 3.0.10+dfsg-5 [3548 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240422 [107 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libsuitesparseconfig7 i386 1:7.7.0+dfsg-2 [22.7 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libamd3 i386 1:7.7.0+dfsg-2 [41.6 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libbtf2 i386 1:7.7.0+dfsg-2 [24.4 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libcamd3 i386 1:7.7.0+dfsg-2 [39.5 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libccolamd3 i386 1:7.7.0+dfsg-2 [42.1 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libcolamd3 i386 1:7.7.0+dfsg-2 [34.1 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14-20240429-1 [733 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libcholmod5 i386 1:7.7.0+dfsg-2 [714 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libcxsparse4 i386 1:7.7.0+dfsg-2 [99.3 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.2-1 [165 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.78.4-7 [1522 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libltdl7 i386 2.4.7-7+b1 [395 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libglpk40 i386 5.0-1+b1 [420 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libklu2 i386 1:7.7.0+dfsg-2 [91.5 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libldl3 i386 1:7.7.0+dfsg-2 [23.6 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libsuitesparse-mongoose3 i386 1:7.7.0+dfsg-2 [52.8 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libumfpack6 i386 1:7.7.0+dfsg-2 [308 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 librbio4 i386 1:7.7.0+dfsg-2 [43.7 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libspqr4 i386 1:7.7.0+dfsg-2 [159 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libspex3 i386 1:7.7.0+dfsg-2 [66.1 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libparu0 i386 1:7.7.0+dfsg-2 [76.2 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libsuitesparse-dev i386 1:7.7.0+dfsg-2 [1673 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libglpk-dev i386 5.0-1+b1 [509 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b1 [35.9 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b3 [197 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libpython3.11t64 i386 3.11.9-1 [1982 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libpython3.11-dev i386 3.11.9-1 [4632 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.11.8-1 [9600 B] Get: 123 http://deb.debian.org/debian unstable/main i386 libqhull-r8.0 i386 2020.2-6+b1 [256 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libsbml5t64 i386 5.20.2+dfsg-3 [2359 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libsbml5-dev i386 5.20.2+dfsg-3 [3392 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.3.2-0.4+b1 [107 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.3.2-0.4+b1 [314 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.3.2-0.4+b1 [108 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.3.2-0.4+b1 [122 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1+b1 [243 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.6-2 [37.0 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-sniffio all 1.3.0-2 [7076 B] Get: 136 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-anyio all 4.3.0-1 [56.5 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python3-brotli i386 1.1.0-2+b3 [323 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2023.11.17-1 [155 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 python3-click all 8.1.7-1 [94.0 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-8 [5469 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 python3-contourpy i386 1.0.7-3 [295 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 python3-cpuinfo all 9.0.0+git20221119-1 [23.2 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 150 http://deb.debian.org/debian unstable/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 python3-depinfo i386 2.2.0-2 [11.5 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 python3.11-dev i386 3.11.9-1 [501 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.11.8-1 [26.1 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 158 http://deb.debian.org/debian unstable/main i386 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 python3-sympy all 1.12-7 [3869 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 162 http://deb.debian.org/debian unstable/main i386 python3-fs all 2.4.16-4 [95.4 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.2.1-1 [1990 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 python3-lz4 i386 4.0.2+dfsg-1+b3 [25.6 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 python3-unicodedata2 i386 15.1.0+ds-1+b1 [298 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 python3-fonttools i386 4.46.0-1 [1613 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 python3-h11 all 0.14.0-1 [50.1 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 173 http://deb.debian.org/debian unstable/main i386 python3-hatchling all 1.24.2-1 [53.2 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 176 http://deb.debian.org/debian unstable/main i386 python3-httpcore all 1.0.4-1 [44.5 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 python3-mdurl all 0.1.2-1 [9444 B] Get: 179 http://deb.debian.org/debian unstable/main i386 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 python3-rich all 13.7.1-1 [201 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 python3-httpx all 0.27.0-1 [76.8 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 python3-zipp all 1.0.0-6 [6696 B] Get: 184 http://deb.debian.org/debian unstable/main i386 python3-importlib-resources all 6.0.1-1 [21.7 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 186 http://deb.debian.org/debian unstable/main i386 python3-rpds-py i386 0.12.0-3 [298 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 python3-referencing all 0.31.0-1 [22.2 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 189 http://deb.debian.org/debian unstable/main i386 python3-jsonschema all 4.19.2-2 [71.2 kB] Get: 190 http://deb.debian.org/debian unstable/main i386 python3-kiwisolver i386 1.4.5-1 [84.8 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 python3-pil i386 10.3.0-2 [566 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 python3-tk i386 3.12.3-1 [110 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 python3-pil.imagetk i386 10.3.0-2 [79.7 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 python3-matplotlib i386 3.6.3-2 [8059 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 python3-swiglpk i386 5.0.10-1 [98.9 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 python3-optlang all 1.8.1-1 [82.4 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.1.4+dfsg-7 [7497 kB] Get: 199 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.43.0-1 [52.5 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 python3-pip all 24.0+dfsg-2 [1517 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 python3-pipdeptree i386 2.2.0-3 [20.6 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 python3-pydantic i386 1.10.14-1 [3147 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.1.2-1 [246 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 python3-pytest-benchmark all 4.0.0-3 [43.4 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 python3-pytest-mock all 3.12.0-1.1 [17.6 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 1.26.18-2 [116 kB] Get: 208 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 209 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml.clib i386 0.2.8+ds-1 [191 kB] Get: 210 http://deb.debian.org/debian unstable/main i386 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 swig i386 4.2.1-1 [1499 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 python3-sbml5 i386 5.20.2+dfsg-3 [3610 kB] Get: 213 http://deb.debian.org/debian unstable/main i386 python3-simplejson i386 3.19.2-1+b1 [70.7 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 python3-tabulate all 0.8.10-1 [38.8 kB] Fetched 152 MB in 4s (35.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19679 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up libglib2.0-0t64:i386 (2.78.4-7) ... No schema files found: doing nothing. Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libexpat1-dev:i386 (2.6.2-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libimagequant0:i386 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libtcl8.6:i386 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libltdl7:i386 (2.4.7-7+b1) ... Setting up libgfortran5:i386 (14-20240429-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.3.2-0.4+b1) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... 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Setting up libcxsparse4:i386 (1:7.7.0+dfsg-2) ... Setting up libcamd3:i386 (1:7.7.0+dfsg-2) ... Setting up libsbml5-dev (5.20.2+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Setting up libglpk40:i386 (5.0-1+b1) ... Setting up librbio4:i386 (1:7.7.0+dfsg-2) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libccolamd3:i386 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:i386 (1.1.35-1+b1) ... 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Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.37-19) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.0-2_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_auto_clean I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.0 configfile: tox.ini plugins: anyio-4.3.0, mock-3.12.0, benchmark-4.0.0 collected 551 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 17%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 43%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 46%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 47%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 51%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py .......ssss.... [ 64%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 72%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 75%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 76%] tests/test_medium/test_boundary_types.py ......... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.11_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_flux_analysis/test_deletion.py:439: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_mat.py: 3 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py: 96 warnings /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:97: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` return most[0] .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.11_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.11_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py:72: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[glpk] 2.4370 (1.0) 49.0949 (1.0) 14.4074 (1.00) 4.2060 (1.04) 14.0639 (1.01) 0.5334 (1.28) 406;575 69,408.6620 (1.00) 2063 1 test_subtract_metabolite_benchmark[cplex] 2.4471 (1.00) 49.3310 (1.00) 14.3667 (1.0) 4.5130 (1.12) 13.9829 (1.0) 0.6193 (1.49) 487;652 69,605.6197 (1.0) 2163 1 test_subtract_metabolite_benchmark[gurobi] 2.5299 (1.04) 52.2761 (1.06) 14.3724 (1.00) 4.0473 (1.0) 14.2241 (1.02) 0.4153 (1.0) 364;511 69,577.6613 (1.00) 2173 1 test_achr_sample_benchmark 483.2931 (198.31) 744.1260 (15.16) 522.0828 (36.34) 58.2850 (14.40) 491.3805 (35.14) 49.6794 (119.64) 79;65 1,915.4049 (0.03) 572 1 test_change_objective_benchmark[optlang-glpk] 608.7739 (249.80) 1,838.0112 (37.44) 635.1353 (44.21) 37.1704 (9.18) 625.1640 (44.71) 17.2833 (41.62) 151;184 1,574.4677 (0.02) 2433 1 test_optgp_sample_benchmark 730.7229 (299.84) 2,045.6072 (41.67) 790.2205 (55.00) 106.0277 (26.20) 743.2218 (53.15) 56.9059 (137.04) 103;106 1,265.4696 (0.02) 908 1 test_loopless_benchmark_after 2,463.9331 (>1000.0) 3,484.7949 (70.98) 2,683.4848 (186.79) 259.2595 (64.06) 2,571.6680 (183.92) 238.8833 (575.27) 23;13 372.6498 (0.01) 155 1 test_loopless_benchmark_before 15,410.6261 (>1000.0) 17,291.2080 (352.20) 16,362.2115 (>1000.0) 647.4466 (159.97) 16,343.0241 (>1000.0) 1,262.3814 (>1000.0) 15;0 61.1164 (0.00) 31 1 test_minimal_medium_mip_benchmark 16,896.5312 (>1000.0) 18,339.9199 (373.56) 17,684.4268 (>1000.0) 352.6406 (87.13) 17,685.8989 (>1000.0) 403.3390 (971.31) 12;1 56.5469 (0.00) 32 1 test_minimal_medium_linear_benchmark 17,186.8310 (>1000.0) 18,285.9178 (372.46) 17,724.3570 (>1000.0) 262.9546 (64.97) 17,741.9864 (>1000.0) 332.5944 (800.94) 9;0 56.4195 (0.00) 32 1 test_copy_benchmark[optlang-glpk] 44,719.8320 (>1000.0) 149,566.4369 (>1000.0) 58,161.5700 (>1000.0) 23,999.5722 (>1000.0) 49,658.1064 (>1000.0) 11,173.9640 (>1000.0) 2;2 17.1935 (0.00) 22 1 test_single_reaction_deletion_benchmark[glpk] 69,250.7371 (>1000.0) 85,591.4149 (>1000.0) 74,631.0871 (>1000.0) 4,120.3946 (>1000.0) 74,629.7000 (>1000.0) 5,295.8890 (>1000.0) 3;1 13.3992 (0.00) 14 1 test_deepcopy_benchmark 69,427.1519 (>1000.0) 214,236.3680 (>1000.0) 96,763.5414 (>1000.0) 47,208.5629 (>1000.0) 71,083.6900 (>1000.0) 49,804.9307 (>1000.0) 3;1 10.3345 (0.00) 15 1 test_gpr_equality_benchmark 84,530.3950 (>1000.0) 94,008.8648 (>1000.0) 86,660.5987 (>1000.0) 2,961.0311 (731.61) 84,920.3849 (>1000.0) 3,003.9622 (>1000.0) 1;1 11.5393 (0.00) 11 1 test_fastcc_benchmark[glpk] 173,622.2571 (>1000.0) 189,203.2251 (>1000.0) 179,040.4045 (>1000.0) 5,823.7913 (>1000.0) 177,022.6639 (>1000.0) 7,555.6729 (>1000.0) 1;0 5.5853 (0.00) 6 1 test_add_metabolite_benchmark[glpk] 248,433.7320 (>1000.0) 251,895.8931 (>1000.0) 250,066.5606 (>1000.0) 1,294.7632 (319.91) 250,131.4369 (>1000.0) 1,723.7524 (>1000.0) 2;0 3.9989 (0.00) 5 1 test_add_metabolite_benchmark[gurobi] 251,316.4680 (>1000.0) 261,287.9069 (>1000.0) 254,003.1096 (>1000.0) 4,143.5141 (>1000.0) 252,774.6449 (>1000.0) 3,655.7154 (>1000.0) 1;1 3.9370 (0.00) 5 1 test_add_metabolite_benchmark[cplex] 253,441.4402 (>1000.0) 258,324.9491 (>1000.0) 254,894.3737 (>1000.0) 1,970.4143 (486.85) 254,362.0360 (>1000.0) 1,823.1517 (>1000.0) 1;1 3.9232 (0.00) 5 1 test_optgp_init_benchmark 261,302.0821 (>1000.0) 274,662.9280 (>1000.0) 268,134.1791 (>1000.0) 4,750.6779 (>1000.0) 268,610.3701 (>1000.0) 4,247.6536 (>1000.0) 2;0 3.7295 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 268,791.2141 (>1000.0) 302,886.6930 (>1000.0) 283,149.0604 (>1000.0) 13,063.7104 (>1000.0) 279,927.4279 (>1000.0) 17,661.1041 (>1000.0) 2;0 3.5317 (0.00) 5 1 test_achr_init_benchmark 292,833.2218 (>1000.0) 304,481.2810 (>1000.0) 296,938.8267 (>1000.0) 4,747.4983 (>1000.0) 296,960.9830 (>1000.0) 6,337.0609 (>1000.0) 1;0 3.3677 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 296,027.1700 (>1000.0) 369,406.6720 (>1000.0) 326,377.9890 (>1000.0) 28,321.0753 (>1000.0) 323,520.2210 (>1000.0) 39,002.1541 (>1000.0) 2;0 3.0639 (0.00) 5 1 test_double_gene_deletion_benchmark 514,346.9679 (>1000.0) 617,119.0341 (>1000.0) 565,834.5638 (>1000.0) 36,335.8420 (>1000.0) 565,875.3482 (>1000.0) 26,010.1563 (>1000.0) 2;0 1.7673 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 542,813.0601 (>1000.0) 548,871.4420 (>1000.0) 546,137.7940 (>1000.0) 2,827.3905 (698.59) 546,902.6000 (>1000.0) 5,316.7100 (>1000.0) 1;0 1.8310 (0.00) 5 1 test_gpr_symbolism_benchmark 646,936.5149 (>1000.0) 905,314.4089 (>1000.0) 701,860.5880 (>1000.0) 113,789.4732 (>1000.0) 654,450.4180 (>1000.0) 69,541.8651 (>1000.0) 1;1 1.4248 (0.00) 5 1 test_pfba_benchmark[glpk] 739,553.3721 (>1000.0) 1,058,527.9129 (>1000.0) 804,479.1189 (>1000.0) 142,022.9888 (>1000.0) 740,833.6820 (>1000.0) 81,555.4807 (>1000.0) 1;1 1.2430 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 792,552.1969 (>1000.0) 1,211,970.4990 (>1000.0) 911,850.4376 (>1000.0) 175,674.8580 (>1000.0) 833,177.2960 (>1000.0) 198,143.6135 (>1000.0) 1;0 1.0967 (0.00) 5 1 test_flux_variability_benchmark[glpk] 835,842.9228 (>1000.0) 858,204.3259 (>1000.0) 846,398.8091 (>1000.0) 10,033.2663 (>1000.0) 843,136.2871 (>1000.0) 18,104.2914 (>1000.0) 2;0 1.1815 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 922,254.4041 (>1000.0) 1,336,475.8340 (>1000.0) 1,090,616.3304 (>1000.0) 214,213.9941 (>1000.0) 958,074.1439 (>1000.0) 395,334.3180 (>1000.0) 2;0 0.9169 (0.00) 5 1 test_double_reaction_deletion_benchmark 1,064,594.3240 (>1000.0) 1,276,014.5180 (>1000.0) 1,209,636.8158 (>1000.0) 85,397.3599 (>1000.0) 1,225,396.7619 (>1000.0) 93,942.8244 (>1000.0) 1;0 0.8267 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 1,150,447.4438 (>1000.0) 1,434,492.1692 (>1000.0) 1,305,256.6854 (>1000.0) 137,167.9935 (>1000.0) 1,333,302.5160 (>1000.0) 266,019.5409 (>1000.0) 1;0 0.7661 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ==== 509 passed, 31 skipped, 11 xfailed, 170 warnings in 246.95s (0:04:06) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11 creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra-0.29.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.0' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.0-2_all.deb'. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.0-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.0-2_i386.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.0-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/57384 and its subdirectories I: Current time: Tue Apr 30 13:31:40 -12 2024 I: pbuilder-time-stamp: 1714527100 Wed May 1 01:31:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Wed May 1 01:31:42 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Wed May 1 01:35:29 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Wed May 1 01:35:30 UTC 2024 I: python-cobra_0.29.0-2_i386.changes: Format: 1.8 Date: Sun, 28 Apr 2024 07:31:52 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all i386 Version: 0.29.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 1069985 Changes: python-cobra (0.29.0-2) unstable; urgency=medium . * Team upload. * Build-Depends: s/libsbml5/libsbml5-dev/ Closes: #1069985 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: 2fbff3a4054ebdfbe5a2e74c8c0923042a9963c0 1437816 python-cobra-data_0.29.0-2_all.deb 3d17bf0a434a6f1aaa2733d76fc866bb658357e0 10955 python-cobra_0.29.0-2_i386.buildinfo 5a2be00a1f78bc47dc0237c122bf25ca5a0ca1f0 1118920 python3-cobra_0.29.0-2_i386.deb Checksums-Sha256: 66c38a7cd227fbf6901221760fe4dd73a9db2712dc31bf58facb3e1f31f53a58 1437816 python-cobra-data_0.29.0-2_all.deb dece210e56dfcfb901802545070b21f2bd7923352c347d6214ca1c2b729343f3 10955 python-cobra_0.29.0-2_i386.buildinfo 1750aca6872746987a161625dc9dc22a1c037132e12ad92e97141c1c517239ba 1118920 python3-cobra_0.29.0-2_i386.deb Files: 390170dd5d73e229e6cd7e883b104efa 1437816 python optional python-cobra-data_0.29.0-2_all.deb d97a54bfb644d907988df5f4dc6a74ae 10955 python optional python-cobra_0.29.0-2_i386.buildinfo c99ec78aacf375e5fd1aa4f1f5ffb192 1118920 python optional python3-cobra_0.29.0-2_i386.deb Wed May 1 01:35:31 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-19054.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/python-cobra_0.29.0-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/python-cobra_0.29.0-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/python-cobra_0.29.0-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/b1/python-cobra_0.29.0-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.9SHcUXBH/b2/python-cobra_0.29.0-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.517s) 0.517s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.051s) 0.051s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 976ms CPU time consumed: 973ms Wed May 1 01:35:34 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 1 01:35:34 UTC 2024 I: python-cobra from unstable built successfully and reproducibly on i386. Wed May 1 01:35:36 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 1 01:35:36 UTC 2024 I: Submitting 12K b1/python-cobra_0.29.0-2_i386.buildinfo.asc Wed May 1 01:35:37 UTC 2024 I: Submitting 12K b2/python-cobra_0.29.0-2_i386.buildinfo.asc Wed May 1 01:35:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 1 01:35:39 UTC 2024 I: Done submitting .buildinfo files. Wed May 1 01:35:39 UTC 2024 I: Removing signed python-cobra_0.29.0-2_i386.buildinfo.asc files: removed './b1/python-cobra_0.29.0-2_i386.buildinfo.asc' removed './b2/python-cobra_0.29.0-2_i386.buildinfo.asc'