maint_debian-med package set for trixie/arm64

• All tracked package sets for trixie/arm64

The package set maint_debian-med in trixie/arm64 consists of 901 packages:
17 (1.9%) packages failed to build reproducibly: metastudent-data dicom3tools libpll hmmer mapsembler2 ncbi-igblast parallel mrtrix3 pydicom dipy gdcm salmon treeview librostlab mmlib igraph emboss
8 (0.9%) packages failed to build from source: picard-tools pynn qrisk2 pigx-rnaseq unifrac-tools rapmap q2cliP python-mne
37 (4.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: bio-eagle iqtree wtdbg2 subarch-select pftools mecat2 megahit fis-gtm soapdenovo plink1.9 lambda-align2 bolt-lmm sortmerna libstatgen q2-phylogeny spades soapaligner theseus probabel elastix soapdenovo2 insighttoolkit5 metabat khmer obitools bmtk xenium plastimatch unicycler minimac4 psortb sight libatomic-queue shovill libmmmulti camitk gubbins
839 (93.1%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bowtie bowtie2 boxshade bppphyview bppsuite brian brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming consensuscore conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med delly dextractor dialign dialign-t diamond-aligner dicomscope discosnp dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba igor igv illustrate imagej indelible infernal insilicoseq ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsbml libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg lighter loki ltrsift lucy lumpy-sv maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimap minimap2 mipe mira mirtop mmseqs2 mosdepth mothur mptp mrbayes mrc mricron multiqc mummer muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nim-hts nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plink plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet proftmb progressivemauve prokka propka proteinortho prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyranges pyscanfcs pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-iow python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pysam python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-alignment q2-cutadapt q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus seqan2 seqan3 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shasta sibelia sibsim4 sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt snakemake snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog spoa spread-phy squizz sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.