maint_debian-med package set for trixie/armhf

• All tracked package sets for trixie/armhf

The package set maint_debian-med in trixie/armhf consists of 831 packages:
24 (2.9%) packages failed to build reproducibly: segemehl biojava-live dicom3tools gbrowse treeview twopaco liblemon libpll jebl2 ncbi-blast+ python-pysam hmmer libamplsolver parallel shapeit4 metastudent-data filtlong gdcm cwltool python-trx-python librostlab igraph mhap ffindex
20 (2.4%) packages failed to build from source: gjh-asl-json libmaus2 biojava6-live libbioparser-dev python-pbcore bbhash q2cliP unifrac-tools abpoa bifrost python-biom-format flye hmmer2 libtecla maude parsinsert ncbi-igblast iitii ivar bustools
199 (23.9%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 sra-sdk elastix iqtree fis-gtm bio-eagle metabat probabel ncbi-vdb python-ete3 rockhopper parallel-fastq-dump igv beagle snpsift snpeff q2-quality-filter q2-cutadapt q2-emperor libwfa2 chromhmm emperor q2-types pbseqlib metaeuk q2-metadata q2-taxa q2-fragment-insertion q2-alignment q2-feature-table minimac4 camitk pizzly libmmmulti seqsero libatomic-queue qcumber srst2 gasic metaphlan kleborate gubbins busco ariba soapaligner lambda-align2 jellyfish1 theseus kma libvcflib insighttoolkit5 subarch-select ntcard minia abyss gdpc shasta discosnp mash sambamba bowtie2 snap-aligner mindthegap gatb-core salmon mrtrix3 simka bcalm kissplice vsearch bolt-lmm swarm-cluster bowtie pbcopper spades diamond-aligner rna-star spaln q2-phylogeny libvbz-hdf-plugin mmlib libgdf khmer python-skbio obitools emboss embassy-domsearch embassy-domainatrix embassy-domalign emboss-explorer pigx-rnaseq pydicom bmtk insilicoseq macsyfinder libhttp-nio-java toml11 psychopy libstatgen pycorrfit pyranges python-cooler macs trinityrnaseq kallisto ncbi-acc-download sortmerna mapdamage seqan-raptor libleidenalg infernal orthanc-dicomweb gentle xxsds-dynamic python-pyfaidx sigviewer nanook veryfasttree seqan3 cwltest galileo orthanc-postgresql btllib lamassemble augur soapdenovo2 nanopolish hisat2 argh rambo-k qtltools prottest python-mne bioperl-run wtdbg2 python-parasail dnarrange xenium ugene castxml mapsembler2 libhac-java python-pangolearn drmaa orthanc orthanc-neuro toil mmseqs2 soapdenovo flexbar pftools charls python-pybedtools bppphyview ncbi-tools6 ctn psortb seqtools libbpp-qt edfbrowser megahit consensuscore pyscanfcs libminc dipy mecat2 cmtk paleomix ctffind fastqc htsjdk libpj-java treeviewx libla4j-java transdecoder amide opencfu unifrac q2-diversity-lib minc-tools lamarc tvc vt barrnap gwyddion ipig libhmsbeagle ltrsift libkmlframework-java liboptions-java phyutility proalign centrifuge rdp-alignment rdp-readseq seaview alter-sequence-alignment spread-phy plastimatch
588 (70.8%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount altree amap-align andi any2fasta aragorn arden argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedtools berkeley-express bioawk biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-user biomaj3-zipkin bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppsuite brian bwa camp capsule-maven-nextflow capsule-nextflow cassiopee cct cdbfasta cd-hit cgview changeo chip-seq chromimpute cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts cutesv cycle cyvcf2 daligner damapper dascrubber dazzdb dcm2niix debian-med delly dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dwgsim ea-utils ecopcr edflib edtsurf eegdev eigensoft elph e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqtl fasttree fermi-lite fitgcp flash freecontact fsa g2 gatk-bwamem gatk-fermilite gemma genometester getdata gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama harmonypy hdmf hhsuite hinge hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible iva jaligner jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kraken2 lagan last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-raa libbpp-seq libbpp-seq-omics libcereal libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhat-trie libhpptools libics libips4o libjung-free-java libmcfp libmems libmialm libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl libpal-java libpsortb libqes librandom123 librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtfbs-perl libthread-pool libvistaio libxdf libzeep libzerg libzerg-perl lighter loki lucy lumpy-sv maffilter mafft malt maq mauve-aligner mcaller mcl medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanosv neobio ngmlr nibabel nim-kexpr nim-lapper nipy njplot norsnet norsp nutsqlite nxtrim odin openslide-python optimir orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-webviewer oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp patman pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium physamp phyx picopore piler pilercr pinfish pique pirs pixelmed placnet plasmidomics plasmidseeker plink plink1.9 plink2 plip poa porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-bx python-cgecore python-cgelib python-cigar python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dicompylercore python-dnaio python-etelemetry python-freecontact python-geneimpacts python-gffutils python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pycosat python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex quicktree quitcount radiant ragout rampler raster3d rate4site raxml ray rdp-classifier readerwriterqueue readseq recan relacy repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa saint salmid samblaster samclip samtools samtools-legacy savvy scoary scrappie scrm scythe seer seirsplus seqkit seqmagick seqprep seqtk seriation setcover sga sibelia sibsim4 sickle sigma-align sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo tophat-recondition toppred trace2dbest tracetuner transrate-tools transtermhp trf trim-galore trimmomatic trinculo uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack wham-align xdffileio xpore yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.