maint_debian-med package set for unstable/armhf

• All tracked package sets for unstable/armhf

The package set maint_debian-med in unstable/armhf consists of 973 packages:
39 (4.0%) packages failed to build reproducibly: nipy ncbi-blast+ python-trx-python q2cliP librostlab dcmtk mmlib odil dicom3tools igraph gbrowse parallel libmjson-java mhap libjung-free-java icb-utils libla4j-java python-pysam libdistlib-java pycorrfit pyscanfcs aeonbits-owner libsbml jebl2 metastudent-data treeview mia alter-sequence-alignment gdcm segemehl biojava6-live libpll hmmer filtlong libamplsolver biojava-live shapeit4 liblemon twopaco
45 (4.6%) packages failed to build from source: bifrost igdiscover abpoa python-screed flye libbioparser-dev python-awkward nipype python-biom-format nibabel ncbi-seg samtools-legacy python-pbcore q2-feature-table iitii maude seqan-raptor nim-hts parsinsert ugene libmaus2 python-mne seqan3 nitime ball dcmstack mlv-smile gjh-asl-json bustools pydicom seqan-needle python-parasail ncbi-igblast btllib toil ivar kmc acedb python-anndata ismrmrd# unifrac-tools bbhash pychopper praat dipy
162 (16.6%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 trinityrnaseq mash mindthegap python-loompy bcalm gatb-core kissplice simka snap-aligner swarm-cluster bowtie pbcopper python-cogent bolt-lmm spades python-cooler diamond-aligner rna-star macsyfinder khmer pyranges spaln python-skbio q2-phylogeny ncbi-vdb lambda-align2 subarch-select mapsembler2 libstatgen salmon mrtrix3 sortmerna infernal canu pftools vsearch theseus bio-eagle obitools probabel mmseqs2 bmtk megahit soapaligner metabat mecat2 soapdenovo2 elastix kallisto iqtree xenium artemis emperor q2-fragment-insertion q2-emperor metaphlan q2-types minimac4 snpeff nthash pbseqlib jellyfish1 fis-gtm kma libvcflib centrifuge embassy-domsearch blasr pbbam snippy smrtanalysis circlator pbdagcon srst2 resfinder-db jellyfish qcumber psortb picard-tools consensuscore ariba freebayes crac gubbins rapmap htsjdk skesa kmerresistance shovill heudiconv drop-seq parallel-fastq-dump metaeuk quorum q2-taxa unifrac igv sspace q2-alignment sepp libwfa2 kraken libgoby-java q2-quality-control genomicsdb python-array-api-compat python-ete3 umap-learn deblur sight vg insighttoolkit5 surankco soapdenovo python-iow gdpc abyss ntcard wtdbg2 libatomic-queue barrnap embassy-domalign fastqc anfo king plastimatch transdecoder unicycler fsm-lite proteinortho bowtie2 gasic seqsero q2-quality-filter kleborate q2-metadata q2-feature-classifier embassy-domainatrix pilon q2-dada2 q2-demux libmmmulti pizzly pigx-rnaseq sambamba plasmidid camitk rockhopper beagle biobambam2 busco paleomix cat-bat snpsift rsem emboss tipp minia sra-sdk shasta discosnp
727 (74.7%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aevol aghermann alien-hunter allelecount altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr epigrass estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy idba idseq-bench igor illustrate imagej imbalanced-learn indelible insilicoseq intake invesalius ipig iva jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libkmlframework-java libleidenalg libmcfp libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner mcaller mcl medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 mialmpick microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nifticlib nim-kexpr nim-lapper njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pymia pynn pynwb pyode pyqi pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.